Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20mutatus_20[genbank_20GCA_5F001430935.1_202015-11-03] 3,075 sequences; 30,376,016 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2726 123 2e-23 seq1061 107 2e-18 seq2257 91.5 1e-13 >seq2726 Length=527079 Score = 123 bits (136), Expect = 2e-23 Identities = 162/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || || ||||| ||||||||||| || ||| Sbjct 136738 CCACCGCGGAGACGAAGAACAAGATGAAGAGTAGATTCCTTTTGAATGTTATAATCAGAG 136797 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| |||| || || ||||| | ||| Sbjct 136798 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAAACGTTGCTGGTCAGGAGGA 136857 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || ||||||||| ||| | || | |||| ||| | | | ||| || ||||||| Sbjct 136858 ATGCCTTCCTTGTCC-TGAATCTTGGTCTTC-ACGTTGTCGATAGTATCAGATGACTCCA 136915 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 |||| | || || || || || || || ||||| |||| Sbjct 136916 CCTCAAGGGTGATGGTCTTTCCGGTAAGAGTCTTGACGA 136954 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||| || || || ||||||||||||||| ||||| || Sbjct 137039 CCGCCACGGAGGCGAAGAACCAAGTGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAGAA 137098 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || ||||| || || || || |||| ||| || ||||| | || Sbjct 137099 AGGGTTCGACCATCTTCAAGCTGTTTACCAGCAAAGATCAAGCGTTGCTGGTCAGGAGGG 137158 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| | | | | | |||||| || |||||||| Sbjct 137159 ATGCCCTCCTTGTCTTGGATCTTGGTCTTGACATTATCA-ATAGTGTCACTAGACTCCAC 137217 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || |||||||| ||||| ||||| ||||||||| Sbjct 137218 CTCGAGGGTGATGGTCTTTCCCGTCAGGGTCTTGACGAAGATCTGCATG 137266 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||||| || |||||||||||||| ||||| || || || | || Sbjct 136297 AACACCAAGTGCAGAGTGCTTTCTTTCTGAATGTTATAATCGGAAAGCGTCCGGCCATCT 136356 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| ||||| || || || || || ||||| | |||| | || ||| | Sbjct 136357 TCAAGCTGCTTTCCGGCAAAGATAAGTCGTTGCTGGTCTGGTGGAATAC-CTTCTTTATC 136415 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| | |||| | ||| | | | ||||| ||||| || |||| ||| ||||| Sbjct 136416 TTGAATCTTTGTCTTAACATTGTCGATTGTGTCCGATGACTCAACTTCCAGCGTGATCGT 136475 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || || || || |||||||||||||| Sbjct 136476 TTTTCCAGTGAGTGTTTTCACGAAAATCTGCAT 136508 >seq1061 Length=321426 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || ||| ||||||||||||||| || || || Sbjct 107714 CCACCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGAA 107773 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| || ||||| || || ||||| ||||| | |||| Sbjct 107774 AGAGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGGGGA 107833 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 107834 ATGCCCTCCTTGTC 107847 >seq2257 Length=132105 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || || ||||| ||| | || || |||| ||||||||||| |||||||| | Sbjct 93799 CCTTTTGGATATTATAATCGCTCAAAGTACGGCCGTCTTCGAGCTGCTTTCCGGCGAAGA 93740 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| || || || || | ||| | || ||||||||| || || |||| || | Sbjct 93739 TCAATCGTTGCTGATCTGGGGGGATGCCCTCCTTGTCTTGAATCTTGCTCTTC-ACATTG 93681 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||||||||||||||||| | || || || || || || |||||||| ||| Sbjct 93680 TCGATTGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTGCCGGTGAGCGTCTTGACG 93621 Query 41852 AA 41853 || Sbjct 93620 AA 93619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462286230190000