Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2399 129 1e-24 seq3464 93.3 9e-14 seq1398 91.5 3e-13 seq2394 84.2 5e-11 >seq2399 Length=446898 Score = 129 bits (142), Expect = 1e-24 Identities = 182/253 (72%), Gaps = 2/253 (1%) Strand=Plus/Minus Query 230386 ATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC 230445 ||||| || || |||||||| | ||| || || ||| | || || | || || ||| Sbjct 271457 ATCATCACCGAGGCAGTTGAGATCGAGAAAGAATTCTTGACGGATGCCCTACCTTG-CGC 271399 Query 230446 CTTA-TTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 230504 | || |||| ||||| || | || ||| | |||||||| || ||||| || ||| | | Sbjct 271398 CCTACTTGGAATGAATTCTAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACAGACT 271339 Query 230505 TTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGA 230564 |||| || |||||| || ||||| | |||||| | | ||||| || | || ||||| Sbjct 271338 ACTTGTGGCCCTTGGTAACAAGAAATTTTACAACGCCACCAACCCATTCGACTTCATGGA 271279 Query 230565 GCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAG 230624 ||||||| | || ||||| ||||||||||| |||||||| |||| || |||| Sbjct 271278 CAACATTTCGTTGGCCGGTAAGACGAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAA 271219 Query 230625 GCCTGGTGTGATG 230637 | ||||||| ||| Sbjct 271218 GGCTGGTGTTATG 271206 >seq3464 Length=197824 Score = 93.3 bits (102), Expect = 9e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 319451 GTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 319510 ||||||||||| ||| ||||| || | || ||||| ||||| ||||| || | Sbjct 38205 GTTCGTAATGGTATATATCCGTGCAGACTTCATCCAGGAAGCCGGAATCGTGACTGACGA 38146 Query 319511 TCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACA 319570 ||| || || || || | | | ||| || || | |||| ||||||| | || Sbjct 38145 TCAGGCTCGTAATCTCTGTGTGTTGCTTCAAATAATCCGCGAGCCACTTCACGTTGGTCA 38086 Query 319571 CAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCAC 319630 || || ||||| ||||| ||||||||||| || | | || |||| || |||||||| Sbjct 38085 CATCCAGGTGGTTAGTCGGTTCGTCAAGAAGGAGAACATCAGCCTTCATGATCATTGCAC 38026 Query 319631 GTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGA 319664 ||||||| || | ||||| ||||| || || || Sbjct 38025 GTGCAAGTGCCAACTTCATCTTCCATCCACCAGA 37992 >seq1398 Length=5683 Score = 91.5 bits (100), Expect = 3e-13 Identities = 197/292 (67%), Gaps = 6/292 (2%) Strand=Plus/Minus Query 292109 ATCACTTCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCACT 292168 || || |||||||| || ||| || | || | || ||||| | | | || ||||| Sbjct 3237 ATGACGTCCTTGCGCGTGGAATTCGAGGCGACCACCGCACCGATCAAAGCCTGCGGCACG 3178 Query 292169 CCCTCGAAATTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCG 292228 | | ||| | ||||||||| |||| ||||| || | ||| || | || ||||| Sbjct 3177 TCGCGGTAATCGGACAGCAGTTGGCTCGTGTCCTTGGGCAGGCAGTAGCCACCGAAACCG 3118 Query 292229 AACGAAGGGTT--TG-AGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATG 292285 ||||| || || || ||||| | || || || || ||||| ||| || || | | Sbjct 3117 AACGAGGGATTGTTGTAGTACGCG---CCGATCCGCGGGTCCAGGCACACGCCGTCGACG 3061 Query 292286 ATTTCTTTCGCATTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCA 292345 || | ||| | | || | | || || || | || ||||| |||||| | ||| Sbjct 3060 ATCTGCCGCGCGTCGAGGCCACGGGCCAGGGCAAACGAGTCCAGTTCATTGAAGAAGGCA 3001 Query 292346 ACTCGCATTGCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCGC 292397 || ||||| || || || ||||| | ||| || |||| |||||||||||||| Sbjct 3000 ACCCGCATCGCCAGGTAGGTGTTCGCGAACAGCTTGATGGCCTCGGCTTCGC 2949 >seq2394 Length=15028 Score = 84.2 bits (92), Expect = 5e-11 Identities = 191/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 292115 TCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCACTCCCTCG 292174 |||||||| || ||| | || || || || | ||| | | || ||||| || Sbjct 4976 TCCTTGCGGGTGCGATTGGCATCGACGATCGCGCGGATCAGGTTCTGCGGCACCTCCGAA 5035 Query 292175 AAATTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGAA 292234 |||| || || || ||||| |||||||| || | |||||| | || || ||||| | Sbjct 5036 TAATTGGCGAGGAGCTGCTTGGTATCCTTGGGCAGGCAATAGCCGCCGTAGCCGAA-GCT 5094 Query 292235 GGGTTTGA-GTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTT 292293 ||| ||| ||| || || ||||| || || || || ||||| ||||| | Sbjct 5095 GGGATTGTTGTAATGCTTGCCGATGCGCGGATCGAGGCCGACGCCATCGATGATCTGGCG 5154 Query 292294 CGCATTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCAT 292353 || | ||| || | || ||| | | || |||||||||||| | ||||| ||||| Sbjct 5155 CGTGTCCATGCCACCGGCGATGGCGTAGCTGTCGAGTTCGTTGAAGAAAGCAACGCGCAT 5214 Query 292354 TGCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCGCG 292398 || ||||| || || | ||| || |||| ||||| || ||||| Sbjct 5215 CGCGAGATAGGTATTGGCGAACAGCTTGATCGCCTCCGCCTCGCG 5259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057776820719030