Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3224 116 4e-21 seq2399 93.3 5e-14 >seq3224 Length=193136 Score = 116 bits (128), Expect = 4e-21 Identities = 172/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||| |||||||| || || || | ||||||| ||||||||||| ||||| || ||| Sbjct 111448 GTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTCTTCAGA 111389 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || || |||||||| ||| ||||| ||||| | |||| | | || || | | Sbjct 111388 CCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCCTTGAGA 111329 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || || | || ||| || || ||||| || || | ||| |||||||||| | | Sbjct 111328 TGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATTTGAACG 111269 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 53047 || ||| |||| | ||||||||| | || || |||| ||||| ||| | || | | Sbjct 111268 ATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCGGGGATG 111209 Query 53048 TTTG 53051 |||| Sbjct 111208 TTTG 111205 >seq2399 Length=446898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| ||||||||||| | | || | ||| || || || || || Sbjct 271509 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCAGTTCATTCGAGAAGGTAAG 271568 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| || |||||||| || | ||| || ||||| || || || ||| ||||| Sbjct 271569 GCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAGCGAACGAGCCACTGAAGAA 271628 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAA 24279 ||| || || || ||||||||||||| Sbjct 271629 AATACCCTCGACGGCCGCAAAGGCAA 271654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593695765688880