Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3158 113 4e-20 seq3102 89.7 4e-13 seq599 86.0 5e-12 >seq3158 Length=82937 Score = 113 bits (124), Expect = 4e-20 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || || |||||||||||||| || ||| || ||||| |||||| Sbjct 51224 ACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGTGCGGCCGTCCTCG 51165 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGT 118648 ||||| || ||||| |||| | || ||||| || ||||| ||||||||||| || || Sbjct 51164 AGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGG 51105 Query 118649 AATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 | | || || ||||| | |||| || || | ||| ||||||| || | || | Sbjct 51104 A--TCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCACCTCGAGAGTGATGGTCT 51047 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 | || |||| || || || ||||||||||||| Sbjct 51046 TTCCTGTCAAGGTCTTGACGAAAATCTGCATGG 51014 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| || ||||||||||||||||| || | || || ||| || | Sbjct 51755 CAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAA 51696 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| || ||| |||| | |||||||| || || || || |||||||||||| || Sbjct 51695 GTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAA 51636 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || | || | ||||| | | || || || | || | ||| |||| Sbjct 51635 TTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGC 51576 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||||| || ||||||||||| Sbjct 51575 CGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | ||| || ||||||||||||||||| || | || || ||| || | Sbjct 52157 CAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAA 52098 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | ||||| || ||| |||| | |||||||| || || || || |||||||||||| || Sbjct 52097 GTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAA 52038 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| ||| || | || | ||||| | | || || || | || | ||| |||| Sbjct 52037 TTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGC 51978 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||||| || ||||||||||| Sbjct 51977 CGGTTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || |||||||| ||||| || | || || || ||||||||||||||| Sbjct 52406 TACCACCACGCAATCTCAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGG 52347 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| ||||| || |||||||| ||||||| ||||| ||||| || | Sbjct 52346 AAAGCGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTG 52287 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| ||| ||| ||||| | || | ||| || | |||| Sbjct 52286 GAATACCTTCTTTATCTTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGA 52227 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || ||||| || || || || |||||||| Sbjct 52226 CTTCTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| || ||||| ||||| | |||||| ||||| ||||| || ||| Sbjct 51516 GTTGATTCTTTCTGGATGTTATAATCCGAAAGAGTGCGGCCGTCCTCAAGCTGCTTGCCA 51457 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||| ||||| || ||||| ||||||||||| || ||| || ||| Sbjct 51456 GCGAAGATCAAACGTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGAATCTTGGTTTTC 51397 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| ||||| | ||| | || || || ||||| || Sbjct 51396 ACATTATCGATGGTATCAGAAGACTCAACCTCTAGGGTGATGGTCTTTCCTGTCAGGGTC 51337 Query 118722 TTTAC 118726 || || Sbjct 51336 TTGAC 51332 >seq3102 Length=369104 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 ||||| ||||| |||||||||| ||| || || |||||||| ||||| || | || Sbjct 110036 TTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAATC 110095 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | |||||||| || || || ||||||||||| || || || ||| || | ||| Sbjct 110096 AATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGCTTTTCACATTGTCG 110155 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||| | ||||||||| | ||| | || |||||||| || || || || || Sbjct 110156 ATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAA 110214 >seq599 Length=174198 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || ||||| ||||| | ||||| || ||||||||||| || Sbjct 69538 GTGGACTCCTTCTGGATGTTATAATCCGAGAGGGTGCGGCCGTCTTCGAGCTGTTTGCCG 69597 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAAT 118651 ||| |||||||||| ||||| || || || ||||||||||||||||| || Sbjct 69598 GCGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTGTCAT 69647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811994880852