Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq3158 109 6e-19 seq3102 95.1 1e-14 >seq3158 Length=82937 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| |||||||||| ||||| ||||| ||||| |||||||| | || || || | || Sbjct 52390 CAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAAAGCGTACGGCCATC 52331 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || ||||| ||||| || ||||||||||| || || | || | | || ||| Sbjct 52330 TTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAATAC-CTTCTTTAT 52272 Query 43091 CATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| | ||||| | | || | | | || || |||||| || || | ||| |||| Sbjct 52271 CTTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGACTTCTAACGTAATGG 52212 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || ||||| || ||||| ||||| Sbjct 52211 TTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| || |||||||| ||||| |||| || ||||| | || || || || Sbjct 51751 ATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTG 51692 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || ||||| || | ||||||||||| | || | | |||||||| | ||| ||| Sbjct 51691 TTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGT-CTTGAATTT 51633 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | |||| ||| | | | |||||| ||||| || || | |||||| || ||||| | Sbjct 51632 TCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGG 51573 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || ||||| Sbjct 51572 TTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039 ||| | |||| || |||||||| ||||| |||| || ||||| | || || || || Sbjct 52153 ATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTG 52094 Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || || ||||| || | ||||||||||| | || | | |||||||| | ||| ||| Sbjct 52093 TTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGT-CTTGAATTT 52035 Query 43100 TTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | |||| ||| | | | |||||| ||||| || || | |||||| || ||||| | Sbjct 52034 TCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGG 51975 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || || || || || ||||| Sbjct 51974 TTAAGGTTTTCACGAAAATCTGCAT 51950 >seq3102 Length=369104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || || ||||| || ||| || |||| || |||||||| || || || | Sbjct 110034 CCTTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAA 110093 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | || |||||| ||| ||| || ||| | | Sbjct 110094 TCAATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGCTTTTCACATTGT 110153 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||||||||| || || || | |||||||| ||||| || || ||||| || | Sbjct 110154 CGATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGA 110213 Query 43174 AG 43175 || Sbjct 110214 AG 110215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571792718786680