Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq3331 91.5 5e-14 seq2529 80.6 9e-11 >seq3331 Length=2353 Score = 91.5 bits (100), Expect = 5e-14 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 44385 CCCGAGGCGCTCGTCGAAC-CTTGCGTGCTCGCCGGCAGTCGGCCGGGCGACGTCGTGTT 44443 ||||||||||| | | | | ||| |||||||| ||| |||||||||||| ||| | Sbjct 906 CCCGAGGCGCTGCTGTATCGCGTGC-TGCTCGCCTGCACCAAGCCGGGCGACGTGGTGCT 848 Query 44444 CGATCCGTTCTTCGGCAGCGGCACGACCGGACAAGTAGCGCAGCGCCTCGGCCGCCGTTT 44503 ||||||||||||||||| |||||| ||||| || || |||||||||| |||| | Sbjct 847 CGATCCGTTCTTCGGCACCGGCACCACCGGTGCGGTGGCCAAGCGCCTCGGGCGCCACTG 788 Query 44504 CATCGGC 44510 |||||| Sbjct 787 GATCGGC 781 >seq2529 Length=4813 Score = 80.6 bits (88), Expect = 9e-11 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 29011 AAGTGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGATCCCAAATCAG 29062 || ||||||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 3916 AATTGGTCGGAGCGATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAG 3967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170664944952870