Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3224 111 2e-19 seq2399 87.8 2e-12 >seq3224 Length=193136 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||| |||||||| || || || | ||||||| ||||||||||| ||||| || ||| Sbjct 111448 GTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTCTTCAGA 111389 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || || |||||||| ||| ||||| || || | |||| | | || || | | Sbjct 111388 CCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCCTTGAGA 111329 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || || | || ||| || || ||||| || || | ||| |||||||||| | | Sbjct 111328 TGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATTTGAACG 111269 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62285 || ||| |||| | ||||||||| | || || |||| ||||| ||| | || | | Sbjct 111268 ATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCGGGGATG 111209 Query 62286 TTTG 62289 |||| Sbjct 111208 TTTG 111205 >seq2399 Length=446898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||| | | || | ||| || || || || || Sbjct 271509 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCAGTTCATTCGAGAAGGTAAG 271568 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || |||||||| || | ||| || ||||||||||| || || ||||| Sbjct 271569 GCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAGCGAACGAGCCACTGAAGAA 271628 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAA 33726 || || || || || |||||||||| Sbjct 271629 AATACCCTCGACGGCCGCAAAGGCAA 271654 Score = 86.0 bits (94), Expect = 8e-12 Identities = 219/330 (66%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 33807 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33866 || || |||| ||||||||| || || || ||||| | ||| || ||||| | Sbjct 271807 TCGATCGCATCAAAGAGATAAGTTCGTTGCTTTGGCTCTTTGATATATGTGTCGATGAGG 271866 Query 33867 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33926 ||| || | || || || ||||| || || ||||| || |||||||| || | Sbjct 271867 AGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGG 271926 Query 33927 GCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCA 33986 || || | ||||| | || || || || || | | ||||||||||| |||||| Sbjct 271927 GCTTCTGGGATCTGGATCTCACCACTGAAGCGCTCGACAAGGTTTTCATTCACGATTCCA 271986 Query 33987 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG 34045 || ||| || || || ||||| || ||| || || || ||| || | || | || Sbjct 271987 TCGGAGGCGGCGAAGAAGGCCAAGACGTGTGAGATGAAGTAGCGTTCATCATCGT-TGAG 272045 Query 34046 T---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 34102 | | |||||| || | || ||| || || | || | ||||| | ||||| || || Sbjct 272046 TCGCTGATTCCAGTCGTGGAGATCCTTGGACAAGTCGATCTCTTCAGCAGTCCAGAAGGA 272105 Query 34103 TGCCTCTGCCTTTTTATACATATTCCAGAT 34132 ||| || ||||| || ||||| | ||| || Sbjct 272106 TGCTTCGGCCTTCTTGTACATTTGCCAAAT 272135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629790195061680