Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3224 269 3e-67 seq2399 93.3 6e-14 >seq3224 Length=193136 Score = 269 bits (298), Expect = 3e-67 Identities = 598/895 (67%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 || ||||| || || | |||| | |||| || || |||| ||||| | ||| | | Sbjct 110241 TCAAACTCATCACCGTAGACATCGGCCAACCCTGGCGCCTCATTAGGACAGAACAATGTC 110182 Query 66042 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 66101 || || |||| | || || |||||||| || | ||| ||| |||||||||| | || Sbjct 110181 CATTCACCGTTCTGCTCAACCCGTTTCATGAACAAATCGGGAGTCCAAAGAGCAAGGAAA 110122 Query 66102 AAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 66161 | ||| | || ||| |||||| ||||| ||||| |||||| || ||| | | | Sbjct 110121 AGATCACGGGCTCTCACTTCCTCCTTTCCGTGGTTCTTACGAAGATCCAGAAACTCGAAA 110062 Query 66162 ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 66221 ||||| | ||||| ||||| | || ||||| | | || ||||| || || || || Sbjct 110061 ATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTGGCCGCTTATTGCCACCT 110002 Query 66222 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 66281 ||||| | ||||| ||||||||| ||| | || | | ||| |||| || |||||||| Sbjct 110001 TGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAGGAACGATCCCATTGGAG 109942 Query 66282 GTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCT 66341 | ||||| || || | || ||| ||| | ||||| ||| | || ||||| Sbjct 109941 GAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATACGATGAACATTAAGACCA 109882 Query 66342 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 66401 || || || || |||| || || | || || ||| | |||||||| || || || Sbjct 109881 ATACCACCAGCTGTTTTGGAAATCAGGGCACAGGTTTTGAGGGTATCATAAATACCGTCG 109822 Query 66402 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 66461 || ||||| ||| |||| | || || |||||| || ||| || | | || ||| Sbjct 109821 ATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGCTGTGGCGTCCCC 109762 Query 66462 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 66521 ||||| || | || |||||||| || || || |||| | || | | ||| || ||| Sbjct 109761 GCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGGACATCAAATTATAGGTC 109702 Query 66522 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 66581 || || | | || |||||| ||||| || || || |||||||| | |||||| Sbjct 109701 TCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACACGCATGATCATGTGT 109642 Query 66582 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 66641 || || | ||| | | ||| || ||| || || || || | |||| || || Sbjct 109641 TGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATGACCTCTCCAGTGTCTTG 109582 Query 66642 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 66699 || || ||||| | ||| ||||| || || ||||||| ||| |||||||||||| | Sbjct 109581 AACCCGAAATATTGGTAGTTGAAA--TCACGATCGTAAACGATAGCCGAGTTGAGTTCCT 109524 Query 66700 CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCAT 66759 | || ||| |||| | || ||| | || || || || | | | | Sbjct 109523 CAGCATGTTTCATAACAATTTCGTAGGTCTTTTGGGAGATCATAGGTGCAGGGCGGTTGT 109464 Query 66760 TTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 66819 | || || |||||| ||| | | | ||| || || ||| |||| ||||||| || | Sbjct 109463 TCTTTGGGTTGACAAAGTGGTAAAGATCGTCAATAACTGACGAAAATTGTTTTTTGGTCT 109404 Query 66820 CTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 |||||| | |||||||| ||||||||||| || | ||| ||||| || ||||| Sbjct 109403 GTTTGTGCAAGTTTGATACAGCTATTCTAGCAGCAAGAATAGCATAGTCTGGATG 109349 Score = 116 bits (128), Expect = 5e-21 Identities = 200/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||| |||||||| || || || | ||||||| ||||||||||| ||||| || ||| Sbjct 111448 GTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTCTTCAGA 111389 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || || |||||||| ||| ||||| || || | |||| | | || || | | Sbjct 111388 CCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCCTTGAGA 111329 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || || | || ||| || || ||||| || || | ||| |||||||||| | | Sbjct 111328 TGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATTTGAACG 111269 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078 || ||| |||| | ||||||||| | || || |||| ||||| ||| | || | | Sbjct 111268 ATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCGGGGATG 111209 Query 65079 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 65125 |||| | || |||| || || || || || || || | ||||| || Sbjct 111208 TTTGGAATGTTTTGAACTGAACCGCCGTCAGCTATGATACGGTTCTTCAT 111159 >seq2399 Length=446898 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||| ||| ||||||||||| | | || | ||| || || || || || Sbjct 271509 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCAGTTCATTCGAGAAGGTAAG 271568 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276 || ||||| || |||||||| || | ||| || ||||| || || || ||| ||||| Sbjct 271569 GCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAGCGAACGAGCCACTGAAGAA 271628 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAA 36302 ||| || || || ||||||||||||| Sbjct 271629 AATACCCTCGACGGCCGCAAAGGCAA 271654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658144161256040