Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3158 116 4e-21 seq3102 98.7 1e-15 seq599 82.4 8e-11 >seq3158 Length=82937 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | ||| ||||| | || || ||||||||||||||||| ||| | Sbjct 51242 CCGCCACGGAGGCGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGAC 51183 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || |||||| |||||| |||||||| || ||||| Sbjct 51182 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 51123 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || || | || || ||| | | || | || ||| | | |||||| Sbjct 51122 ATGCCCTCCTTATC-CTGGATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCAC 51064 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || ||||| || ||||| Sbjct 51063 CTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCAT 51016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||||||||| || || | || | ||||| || ||||| || Sbjct 51744 GTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTGTTTGCCG 51685 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || ||||| || || || || || || ||||| ||| |||| ||||| Sbjct 51684 GCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT-TGAATTTTCGTTTT 51626 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||||| || || || || | || | |||||||||||| || || Sbjct 51625 TACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGGTTAAGGT 51566 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| || |||||| Sbjct 51565 TTTCACGAAAATCTGCATA 51547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||||||||| || || | || | ||||| || ||||| || Sbjct 52146 GTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTGTTTGCCG 52087 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| || ||||| || || || || || || ||||| ||| |||| ||||| Sbjct 52086 GCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT-TGAATTTTCGTTTT 52028 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||||| || || || || | || | |||||||||||| || || Sbjct 52027 TACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGGTTAAGGT 51968 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| || |||||| Sbjct 51967 TTTCACGAAAATCTGCATA 51949 >seq3102 Length=369104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 ||||| |||||||||||||||| || | |||||||||||| || || ||| | ||| Sbjct 110036 TTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAATC 110095 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | || ||||| || || || ||||| || || || ||| || ||| | | || Sbjct 110096 AATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGCTTTTCACATTGTCG 110155 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | ||||||| | | ||| ||||||| ||| | ||||||||||| | || || ||||| Sbjct 110156 ATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAA 110214 >seq599 Length=174198 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || ||||| || || ||||||||||| Sbjct 69508 CCACCGCGGAGACGAAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTATAATCCGAG 69567 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||||||||||||| || || |||| ||||||||||| || || || Sbjct 69568 AGGGTGCGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 69627 Query 139658 ATGCCTTCTTTGTCGGTGAT 139677 ||||| || ||||| || || Sbjct 69628 ATGCCCTCCTTGTCTGTCAT 69647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496042415015200