Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq3180 109 4e-19 seq2546 87.8 1e-12 >seq3180 Length=115279 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 7/169 (4%) Strand=Plus/Minus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| ||||| || | ||| || || || |||||||| |||||||||| || || || Sbjct 1234 CTTGATCAGGCCGGTGATCACGTCGACCGAAGGCCGCTGGGTCGCCAGGATCAGGTGGAT 1175 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTA 99512 |||||| || |||||||||||||| | ||| | ||| | || | | |||||| Sbjct 1174 GCCGGCGGCGCGCGCCTTCTGCGCCAGGCGAGCGATGAGCTCTTCGATC---TTCTTG-- 1120 Query 99513 GCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGT 99559 |||| ||||||| || || |||||||| || | ||| |||||||||| Sbjct 1119 CCCACCACCATCATCAGGTCGGCGAGTTCGTCGATCACCACCACGATGT 1071 Score = 82.4 bits (90), Expect = 5e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 99774 GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCC 99833 ||| |||||||| | | ||| | ||||||| | |||||||| |||||||| | ||| Sbjct 769 GTAAAGCAGCGACAGGATCATCGCGTTGATGCCGACCGACTTGCCGGATCCGGTGGTGCC 710 Query 99834 AGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCGACGT 99892 |||||||||| ||||||||||| |||||| || | | || ||||| ||| || Sbjct 709 GGCCACCAGCACGTGCGGCATCTTGGCCAGG-TCGGCCACGACAGGATTGCCGACGATGT 651 Query 99893 CCTTGCCCA 99901 ||||||||| Sbjct 650 CCTTGCCCA 642 >seq2546 Length=2143 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 99375 CCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGT 99434 ||||| |||| ||| |||||| | ||| || | || || || ||||| |||||||| Sbjct 809 CCGCGTCGGCAGGTTCGCCTTGATCACGCCGGTGATGACGTCGACCGAGGGGCGCTGCGT 750 Query 99435 CGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482 ||||| || ||| || ||||| ||||| |||||||| ||||||| ||| Sbjct 749 CGCCATGATGAGGTGGATGCCCGCCGCGCGCGCCTTTTGCGCGAGGCG 702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354628154373066