Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq1247 93.3 2e-14 >seq1247 Length=8953 Score = 93.3 bits (102), Expect = 2e-14 Identities = 210/312 (67%), Gaps = 9/312 (3%) Strand=Plus/Minus Query 11200 CACTACCTCGGTGCTGTAGTGGTCCTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAG 11259 ||| |||||||| ||| |||||||||| | ||| ||||||| |||||||| | || Sbjct 8543 CACGACCTCGGTCGAATAGCGGTCCTGGCCATTCTGATCCTGCCATTTGCGGGTCTGCAG 8484 Query 11260 GCTGCCTTCGATGTAGACCTGGGAGCCCTTTCGCAGGTATTGCGCTGCGAT-TTCGGCCA 11318 ||| ||||| ||||||| || ||||| || ||| | || | || | |||| | | Sbjct 8483 CTGGCCCTCGATATAGACCTTCGACCCCTTGCGTAGGAAGCGCTCGGCCACGTTCGCCAA 8424 Query 11319 GCCGGCCA--AAGAGCACGACCCGGTGCCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTG 11376 ||| | |||| | ||||| ||||| ||||| |||| ||| ||| | | Sbjct 8423 GCCTTCGTTGAAGATCGCGACCGAATGCCATTCGGTTTTTTCCTTGCGCTCGCCCGAATT 8364 Query 11377 CTTGTCTTTCCAGCTTTCGCTAGTGGCCAGACTGAGGGAGGTGACCGCCTTTCCGCC--- 11433 || |||||||||||||| || || | || | | | ||| |||| ||||| Sbjct 8363 GCGATCCTTCCAGCTTTCGCTGGTCGCGA---TGCGCAGGTTCACCACCTTGCCGCCGTT 8307 Query 11434 CGGGGTAGATCTTGCGTCTGGATCCTGGCCCAGATGGCCGACCAGGATTACCTTGTTCAC 11493 | || || | | || ||||| | || |||| |||||| || || |||||||| || Sbjct 8306 CTGGAACGAGCGCGATTCGGGATCGCGCCCGAGATTGCCGACGAGAATAACCTTGTTAAC 8247 Query 11494 TCCGCGTGCCAT 11505 | || |||||| Sbjct 8246 GCTGCCTGCCAT 8235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208490354486596