Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3224 260 2e-64 seq2399 96.9 4e-15 >seq3224 Length=193136 Score = 260 bits (288), Expect = 2e-64 Identities = 596/895 (67%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || || | |||| | |||| || || |||| ||||| | ||| | | Sbjct 110241 TCAAACTCATCACCGTAGACATCGGCCAACCCTGGCGCCTCATTAGGACAGAACAATGTC 110182 Query 63198 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63257 || || |||| | || || |||||||| || | ||| ||| |||||||||| | || Sbjct 110181 CATTCACCGTTCTGCTCAACCCGTTTCATGAACAAATCGGGAGTCCAAAGAGCAAGGAAA 110122 Query 63258 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63317 ||||| | || ||| |||||| ||||| ||||| |||||| || ||| | | | Sbjct 110121 AGATCACGGGCTCTCACTTCCTCCTTTCCGTGGTTCTTACGAAGATCCAGAAACTCGAAA 110062 Query 63318 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63377 ||||| || ||||| ||||| | || ||||| | | || ||||| || || || || Sbjct 110061 ATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTGGCCGCTTATTGCCACCT 110002 Query 63378 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGAT 63437 ||||| | ||||| ||||||||| ||| | || | | ||| |||| || || || || Sbjct 110001 TGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAGGAACGATCCCATTGGAG 109942 Query 63438 ATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63497 ||||| || || | || ||| ||| | ||||| ||| | || ||||| Sbjct 109941 GAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATACGATGAACATTAAGACCA 109882 Query 63498 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCT 63557 || || || || |||| || || | || || ||| | || ||||| ||||| || Sbjct 109881 ATACCACCAGCTGTTTTGGAAATCAGGGCACAGGTTTTGAGGGTATCATAAATACCGTCG 109822 Query 63558 ATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63617 |||||||| || |||| | || || |||||| || ||| || | | || ||| Sbjct 109821 ATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGCTGTGGCGTCCCC 109762 Query 63618 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63677 ||||| || | || |||||||| || || || |||| | || | | ||| || ||| Sbjct 109761 GCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGGACATCAAATTATAGGTC 109702 Query 63678 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63737 || || | | || |||||| ||||| || || || |||||||| | |||||| Sbjct 109701 TCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACACGCATGATCATGTGT 109642 Query 63738 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63797 || || | ||| | | ||| || ||| || || || || | |||| || || Sbjct 109641 TGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATGACCTCTCCAGTGTCTTG 109582 Query 63798 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 63855 || || ||||| | ||| ||||| || || ||||||| ||| |||||||||||| | Sbjct 109581 AACCCGAAATATTGGTAGTTGAAA--TCACGATCGTAAACGATAGCCGAGTTGAGTTCCT 109524 Query 63856 CCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCCAT 63915 | || ||| |||| || || ||| | || || || || | | | | Sbjct 109523 CAGCATGTTTCATAACAATTTCGTAGGTCTTTTGGGAGATCATAGGTGCAGGGCGGTTGT 109464 Query 63916 TTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 63975 | || || || ||| ||| | | | ||| || || ||| |||| ||||||| || | Sbjct 109463 TCTTTGGGTTGACAAAGTGGTAAAGATCGTCAATAACTGACGAAAATTGTTTTTTGGTCT 109404 Query 63976 CCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 ||||| | |||||||| |||||||| || || ||||| ||||| || ||||| Sbjct 109403 GTTTGTGCAAGTTTGATACAGCTATTCTAGCAGCAAGAATAGCATAGTCTGGATG 109349 Score = 116 bits (128), Expect = 5e-21 Identities = 200/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 ||||| |||||||| || || || | ||||||| ||||||||||| ||||| || ||| Sbjct 111448 GTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTCTTCAGA 111389 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || || |||||||| ||| ||||| || || | |||| | | || || | | Sbjct 111388 CCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCCTTGAGA 111329 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || || || | || ||| || || ||||| || || | ||| |||||||||| | | Sbjct 111328 TGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATTTGAACG 111269 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 || ||| |||| | ||||||||| | || || |||| ||||| ||| | || | | Sbjct 111268 ATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCGGGGATG 111209 Query 62235 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 |||| | || |||| || || || || || || || | ||||| || Sbjct 111208 TTTGGAATGTTTTGAACTGAACCGCCGTCAGCTATGATACGGTTCTTCAT 111159 >seq2399 Length=446898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||| ||| ||||||||||| | | || ||||| || || || || || Sbjct 271509 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCAGTTCATTCGAGAAGGTAAG 271568 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||| || | ||| || ||||||||||| || ||| ||||| Sbjct 271569 GCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAGCGAACGAGCCACTGAAGAA 271628 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAA 33448 || || || || || |||||||||| Sbjct 271629 AATACCCTCGACGGCCGCAAAGGCAA 271654 Score = 82.4 bits (90), Expect = 1e-10 Identities = 218/330 (66%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || || |||| ||||||||| || || || ||||| | ||| || ||||| | Sbjct 271807 TCGATCGCATCAAAGAGATAAGTTCGTTGCTTTGGCTCTTTGATATATGTGTCGATGAGG 271866 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 ||| || | || || || ||||| || || ||||| || |||||||| || | Sbjct 271867 AGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGG 271926 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCG 33708 || || | ||||| | || || || || || | | ||||||||||| ||||| Sbjct 271927 GCTTCTGGGATCTGGATCTCACCACTGAAGCGCTCGACAAGGTTTTCATTCACGATTCCA 271986 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG 33767 || ||| || || || ||||| || ||| || || || ||| || | || | || Sbjct 271987 TCGGAGGCGGCGAAGAAGGCCAAGACGTGTGAGATGAAGTAGCGTTCATCATCGT-TGAG 272045 Query 33768 T---TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 | | |||||| || | || ||| || || | || | ||||| | ||||| || || Sbjct 272046 TCGCTGATTCCAGTCGTGGAGATCCTTGGACAAGTCGATCTCTTCAGCAGTCCAGAAGGA 272105 Query 33825 TGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 ||| || ||||| || ||||| | ||| || Sbjct 272106 TGCTTCGGCCTTCTTGTACATTTGCCAAAT 272135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920094009960