Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3224 288 1e-72 seq2399 95.1 2e-14 >seq3224 Length=193136 Score = 288 bits (318), Expect = 1e-72 Identities = 602/895 (67%), Gaps = 4/895 (0%) Strand=Plus/Minus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| || || | |||| | ||| || || |||| ||||| | ||| | | Sbjct 110241 TCAAACTCATCACCGTAGACATCGGCCAACCCTGGCGCCTCATTAGGACAGAACAATGTC 110182 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || |||| | || || |||||||| || | ||| ||| |||||||||| | || Sbjct 110181 CATTCACCGTTCTGCTCAACCCGTTTCATGAACAAATCGGGAGTCCAAAGAGCAAGGAAA 110122 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | || ||| |||||| ||||| ||||| |||||| || ||| | | | Sbjct 110121 AGATCACGGGCTCTCACTTCCTCCTTTCCGTGGTTCTTACGAAGATCCAGAAACTCGAAA 110062 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 ||||| || ||||| ||||| | || ||||| | | || ||||| || || || || Sbjct 110061 ATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTGGCCGCTTATTGCCACCT 110002 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 ||||| | ||||| ||||||||| ||| | || | | ||| |||| || |||||||| Sbjct 110001 TGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAGGAACGATCCCATTGGAG 109942 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCT 63352 | ||||| || |||| || ||| ||| | ||||| ||| | || ||||| Sbjct 109941 GAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATACGATGAACATTAAGACCA 109882 Query 63353 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 63412 || || || || |||| || || | || || ||| | |||||||| || || || Sbjct 109881 ATACCACCAGCTGTTTTGGAAATCAGGGCACAGGTTTTGAGGGTATCATAAATACCGTCG 109822 Query 63413 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 63472 || ||||| ||| |||| | || || |||||| || ||| || | | || ||| Sbjct 109821 ATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGCTGTGGCGTCCCC 109762 Query 63473 GCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTC 63532 ||||| || | || |||||||| ||||| || |||| | || | | ||| || ||| Sbjct 109761 GCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGGACATCAAATTATAGGTC 109702 Query 63533 TCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGC 63592 || || | | || |||||| ||||| || || || |||||||| | |||||| Sbjct 109701 TCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACACGCATGATCATGTGT 109642 Query 63593 TGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTA 63652 || || | ||| | | ||| || ||| || || || || | |||| || || Sbjct 109641 TGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATGACCTCTCCAGTGTCTTG 109582 Query 63653 AAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 63710 || || ||||| | ||| ||||| || || ||||||| ||| |||||||||||| | Sbjct 109581 AACCCGAAATATTGGTAGTTGAAA--TCACGATCGTAAACGATAGCCGAGTTGAGTTCCT 109524 Query 63711 CCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCAT 63770 | || ||| |||| | || ||| | || || ||||| | | | Sbjct 109523 CAGCATGTTTCATAACAATTTCGTAGGTCTTTTGGGAGATCATAGGTGCAGGGCGGTTGT 109464 Query 63771 TTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTT 63830 | || || |||||| ||| | | | ||| || || ||| |||| ||||||| || | Sbjct 109463 TCTTTGGGTTGACAAAGTGGTAAAGATCGTCAATAACTGACGAAAATTGTTTTTTGGTCT 109404 Query 63831 CTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 |||||| | |||||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 109403 GTTTGTGCAAGTTTGATACAGCTATTCTAGCAGCAAGAATAGCATAGTCTGGATG 109349 Score = 111 bits (122), Expect = 2e-19 Identities = 199/290 (69%), Gaps = 3/290 (1%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 ||||| |||||||| || || || | ||||||| ||||||||||| ||||| || ||| Sbjct 111448 GTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTCTTCAGA 111389 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || || |||||||| ||| ||||| || || | |||| | | || || | | Sbjct 111388 CCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCCTTGAGA 111329 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || || || | || ||| || || ||||| || || | ||| |||||||||| | Sbjct 111328 TGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATTTGAACG 111269 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 || ||| |||| | ||||||||| | || || |||| ||||| ||| | || | | Sbjct 111268 ATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCGGGGATG 111209 Query 62090 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62136 |||| | || |||| || || || || || || || | ||||| || Sbjct 111208 TTTGGAATGTTTTGAACTGAACCGCCGTCAGCTATGATACGGTTCTTCAT 111159 >seq2399 Length=446898 Score = 95.1 bits (104), Expect = 2e-14 Identities = 296/452 (65%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 |||||| || || ||||| ||||| ||||| || ||||| || || || ||||| | Sbjct 271206 CATAACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTCGTCTTACCGGC 271265 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 || || || || |||||||| |||||||| ||||| | || |||| ||| || | | Sbjct 271266 CAACGAAATGTTGTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAAAATTTCTTGT-TAC 271324 Query 32477 CAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 32534 ||| || || | | ||| || || || || || || || ||| | | | || Sbjct 271325 CAAGGGCCACAAGT-AGTCTGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTAGAA 271383 Query 32535 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 32594 |||||||| | || || || || | || | ||||||| || || || Sbjct 271384 TTCATTCCAAGTAGGGCGCAAGGTAGGGCATCCGTCAAGAATTCTTTCTCGATCTCAACT 271443 Query 32595 GCGTCTGTTATAATAGATCTTACTGTTT-CTTCACTCGGTGGATACAATAAATGTTTAAA 32653 || || || || || | || | | || || || || | | ||| ||| Sbjct 271444 GCCTCGGTGATGATGGCCTGGACGGCCGGCGGGCCTGGGCGGTGACGA-AGATGAGAAAA 271502 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 | | ||| || || ||| ||| ||||||||||| | | || | ||| || || || Sbjct 271503 GAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCAGTTCATTCGAGAA 271562 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 || || || ||||| || |||||||| || | ||| || ||||| || || || ||| Sbjct 271563 GGTAAGGCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAGCGAACGAGCCACT 271622 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 |||||||| || || || ||||||||||||| Sbjct 271623 GAAGAAAATACCCTCGACGGCCGCAAAGGCAA 271654 Score = 82.4 bits (90), Expect = 1e-10 Identities = 218/330 (66%), Gaps = 5/330 (2%) Strand=Plus/Plus Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || |||| ||||||||| || || || ||||| | |||||| || || | Sbjct 271807 TCGATCGCATCAAAGAGATAAGTTCGTTGCTTTGGCTCTTTGATATATGTGTCGATGAGG 271866 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 ||| || | || || || ||||| || || || || || ||||||||||| | Sbjct 271867 AGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATAATCTGGAACCCGTAGAAGCAACGG 271926 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 || || | ||||| | || || || || || | | ||||||||||| ||||| Sbjct 271927 GCTTCTGGGATCTGGATCTCACCACTGAAGCGCTCGACAAGGTTTTCATTCACGATTCCA 271986 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTAG 33124 || ||| || || || ||||| || ||| || || || ||| || | || | || Sbjct 271987 TCGGAGGCGGCGAAGAAGGCCAAGACGTGTGAGATGAAGTAGCGTTCATCATCGT-TGAG 272045 Query 33125 T---TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 | | |||||| || | || ||| || || | || | ||||| | ||||| || || Sbjct 272046 TCGCTGATTCCAGTCGTGGAGATCCTTGGACAAGTCGATCTCTTCAGCAGTCCAGAAGGA 272105 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||| || ||||| || ||||| | ||| || Sbjct 272106 TGCTTCGGCCTTCTTGTACATTTGCCAAAT 272135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633604429087600