Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3158 123 2e-23 seq3102 86.0 5e-12 >seq3158 Length=82937 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || || ||||| || | ||||| | ||||| || || || Sbjct 51548 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 51607 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || | || | |||| ||| ||||| || || |||||||| ||| Sbjct 51608 GACACAATTGA--CAACGTAAAAACGAAAATTCAA-GACAAGGAGGGAATTCCACCAGAC 51664 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||||| | || || |||||||||||| | ||||||| ||| || | || ||| Sbjct 51665 CAGCAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCGGACGCTCTCTGACTAC 51724 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||||||||| |||||| | || || Sbjct 51725 AACATTCAAAAAGAATCCACACTACATCTTGTCCT 51759 Score = 123 bits (136), Expect = 2e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || || ||||| || | ||||| | ||||| || || || Sbjct 51950 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 52009 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || | || | |||| ||| ||||| || || |||||||| ||| Sbjct 52010 GACACAATTGA--CAACGTAAAAACGAAAATTCAA-GACAAGGAGGGAATTCCACCAGAC 52066 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||||| | || || |||||||||||| | ||||||| ||| || | || ||| Sbjct 52067 CAGCAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCGGACGCTCTCTGACTAC 52126 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||||||||||||||| |||||| | || || Sbjct 52127 AACATTCAAAAAGAATCCACACTACATCTTGTCCT 52161 Score = 102 bits (112), Expect = 7e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| ||||| || || ||||||| |||| |||||||| Sbjct 51013 ACCATGCAGATTTTCGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTGGAGTCT 51072 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || |||||||| || || ||| || ||| || || || || ||||| || | Sbjct 51073 AGCGATACTATCGA--CAATGTTAAGACCAAGATCCAGGATAAGGAGGGCATTCCTCCAG 51130 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || | || ||||| ||||| || | || || | ||||| || ||| | Sbjct 51131 ACCAGCAACGCTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCCGACT 51190 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || ||||||||||||||||| || || || || || Sbjct 51191 ATAACATTCAAAAAGAATCCACCCTCCACTTGGTTCT 51227 >seq3102 Length=369104 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/183 (71%), Gaps = 8/183 (4%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | ||||| || ||||||| | || || |||||| ||||| ||| Sbjct 110214 TTCGTCAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCGAGCGACACAATC 110155 Query 25068 GAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCG 25123 || || || |||||| | || || || || || || ||||| ||||| ||||| Sbjct 110154 GA--CAATGTGAAAAGCAAGA--TCCAGGATAAGGAGGGCATCCCACCGGACCAGCAGCG 110099 Query 25124 GATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCA 25183 | ||||||||||| || || | ||||| | ||| ||| || ||||||| || || || Sbjct 110098 ATTGATTTTTGCCGGAAAGCAGCTCGAAGACGGTCGTACTTTGAGCGATTATAACATCCA 110039 Query 25184 AAA 25186 ||| Sbjct 110038 AAA 110036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433309616195015