Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2399 84.2 2e-11 >seq2399 Length=446898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/248 (69%), Gaps = 12/248 (5%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||||||| || ||||| || ||||| || || ||||| || ||||| || | Sbjct 271206 CATAACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTCGTCTTACCGGC 271265 Query 92850 CAAAGATATCGAATTCACTA-GT-GATTGGATTCTTGGCGTTATAATA---CTTTTCACC 92904 ||| || || | || | || || ||| || ||||||| ||| | ||| | ||| Sbjct 271266 CAACGAAATGTTGTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAAAATTTCTTGTTACC 271325 Query 92905 GATCAACTCGTACAA-TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC 92963 | | |||| || ||| ||||| || || || |||||||| |||| | | | Sbjct 271326 AAGGGCC----ACAAGTAGTCTGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTAG 271381 Query 92964 AATTCATTCCTAGAAGA-CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACA 93022 |||||||||| || || || | |||||| || || |||||||| ||||||||||| || Sbjct 271382 AATTCATTCCAAGTAGGGCGCA-AGGTAGGGCATCCGTCAAGAATTCTTTCTCGATCTCA 271440 Query 93023 ACGGCTTC 93030 || || || Sbjct 271441 ACTGCCTC 271448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556836569594440