Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1535 102 2e-16 seq3250 87.8 4e-12 seq513 84.2 4e-11 >seq1535 Length=91445 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 |||||| ||||| || |||| |||| | || ||||||| ||||| ||||| || Sbjct 47184 AGGTGAAGATCTTTGCAACTGCACTTTCAACTTGGCCTATGGTGCCAAGATCCTGCTCAA 47243 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || | ||| ||||||||||| | || || |||||| | |||||||| || | Sbjct 47244 CCAAACTCACCTTCGTCTCAAGCGTGGCCAACGTTACGGTCTCCTGGGTCCCAACGGTTC 47303 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 || ||| |||||| |||||||||||| |||| ||| | ||||| || || || Sbjct 47304 CGGAAAGTCCACTCTCATGCGCGCCATTAACAACGAGCAGGTTGAAGGTTTCCCCAAGAA 47363 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGA 279562 ||| || | ||| || | ||| ||||||||| |||| Sbjct 47364 GAGTGAAGTTAAGACTGTCTTTGTCGAGCACGACCTCGA 47402 Score = 93.3 bits (102), Expect = 9e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| || ||||||| | ||||||||||| || ||||| ||||| || ||| Sbjct 48565 GGTCTCGATGCCGAGTTGGTTTCCCACTCTCGCATGCGTGGTCTCTCTGGTGGTCAGCGT 48624 Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 ||||| | || ||| || |||| ||||||| ||||||| ||||||| |||||||| Sbjct 48625 GTCAAGGTCGTTCTCGCCGCTTGCTCC-TGGCAACGCCCTCACTTGATCGTCCTCGACGA 48683 Query 280799 GCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 ||| |||||||| || ||| | || ||| || || ||| Sbjct 48684 GCCCACCAACTACCTCGACAGAGACTCCCTTGGTGCCCTG 48723 >seq3250 Length=198849 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| Sbjct 59749 AGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGAC 59690 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 59689 CCCCGCATCGGGC 59677 >seq513 Length=9714 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 19710 GCACTCTTCCTTGGTCGCGGGCTCCATGCACCGGTTGCCTACGAAGGCGCCCTCAAGCTC 19769 || || ||||| || ||||| || || ||| | ||| ||||||||| ||||||||| Sbjct 3255 GCGCTGTTCCTCGGCCGCGGCCTGCACTACCCGATCGCCCTCGAAGGCGCGCTCAAGCTC 3314 Query 19770 AAGGAGATCAGTTACATCCACGCAGAGG-GTATTTCGGCAGGCGAACTTAAGCACGGGCC 19828 ||||| |||| ||||||||||| |||| ||| |||| || || | ||||| || || Sbjct 3315 AAGGAAATCACGTACATCCACGCCGAGGCGTA-CGCGGCGGGTGAGTTGAAGCATGGCCC 3373 Query 19829 TCTTGCTCTTCTCAACAAGCCTG-TTCCGGTTGT-AGTGTCTCTGGCAGACCACA-GTTG 19885 || || || || || |||| | | ||||| || | || | | | || ||| | || Sbjct 3374 GCTGGCGCTGGTC-ACCAGCCAGATGCCGGTGGTGACGGTGGC-GCCGAACGACACGCTG 3431 Query 19886 CCTGGATAAGCTAAAGTCAAACATCGACGAAGTGCTTGCCCGTGG 19930 ||||| ||||| ||| ||||| | ||||| | |||||| || Sbjct 3432 -CTGGAAAAGCTCAAGAGCAACATGCAGGAAGTCCGTGCCCGCGG 3475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027790958157521