Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq1179 161 3e-35 >seq1179 Length=10284 Score = 161 bits (178), Expect = 3e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 42723 TCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTGCACGACCC 42782 |||||| |||| ||| ||||||||| || |||||| | |||||| | || Sbjct 6804 TCGGCACGCCGACGCAATTGCCGTAGCCGCCGATGCCATGGACGACGCCCGAGATGAGGT 6745 Query 42783 GCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGCGACCGGGC 42842 | | | | ||||| |||| |||||||||||| |||| |||| ||| || || | Sbjct 6744 GGCGCATCTTGGGGTGATCGGGGCGGCCGAAGCGCAGCGCGTTCATGTTCGCCACGGGCC 6685 Query 42843 GAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGCGCCCTGGA 42902 | |||||||||| || | |||||| | ||||||||| || ||||||||||||||||| Sbjct 6684 GCGCGCCCATGGTGAACACGTCGCGCAGGATGCCGCCGACGCCCGTCGCCGCGCCCTGAT 6625 Query 42903 AGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGCCCATCCCT 42962 | ||||||||| |||||||||||||||| ||| |||||| || | ||| || | Sbjct 6624 ATGGCTCGATGTACGAGGGGTGGTTGTGCGATTCCATCTTGAAGATGGCGGCCTGGCCAT 6565 Query 42963 CGCCGACGTCGATGACGCCCGCGTTCT 42989 |||||| ||||| ||||| || |||| Sbjct 6564 CGCCGATATCGATAACGCCGGCATTCT 6538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148240271957094