Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3158 143 6e-29 seq3102 111 4e-19 >seq3158 Length=82937 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | ||| ||||||||| || || ||||| | | Sbjct 51774 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 51715 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| | |||||| || |||||||||| ||||| || ||| Sbjct 51714 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 51655 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || ||||||| ||| ||||| || || | ||| ||||| ||| Sbjct 51654 ATTCCCTCCTTGTCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACT 51595 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||| ||||| | || || ||||| |||||||| Sbjct 51594 TCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | | ||| || ||||| | ||| ||||||||| || || ||||| | | Sbjct 52176 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 52117 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| | |||||| || |||||||||| ||||| || ||| Sbjct 52116 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 52057 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || || || ||||||| ||| ||||| || || | ||| ||||| ||| Sbjct 52056 ATTCCCTCCTTGTCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACT 51997 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||| ||||| | || || ||||| |||||||| Sbjct 51996 TCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| || | || | ||| ||||||||| || |||||||||| Sbjct 51242 CCGCCACGGAGGCGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGAC 51183 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| ||||| || | || || || || ||||||| || || || ||||| Sbjct 51182 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGG---TCTGGA 51126 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || ||||||||||| || | || || || || |||| |||||| || || Sbjct 51125 GGAATGCCCTCCTTATCCTGGATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCC 51066 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 51065 ACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCAT 51016 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| | || | ||| | |||||||| || || || || || |||| Sbjct 52404 CCACCACGCAATCTCAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAA 52345 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || || ||||| | ||| ||||| || ||||| || ||||||||| ||| Sbjct 52344 AGCGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGA 52285 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || || || | || ||||| || || | ||| |||||| ||| Sbjct 52284 ATACCTTCTTTATCTTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGACT 52225 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||| || || || || ||||| ||||| ||||| |||||||| Sbjct 52224 TCTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 >seq3102 Length=369104 Score = 111 bits (122), Expect = 4e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| ||| | || || |||||||| | || ||||| || || ||| Sbjct 110036 TTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAATC 110095 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||| || |||||| || || ||||||||||| || |||||| || || Sbjct 110096 AATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGCTTTTCACATTGTCG 110155 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | |||||||| || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 110156 ATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAA 110214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179601787045118