Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2399 125 2e-23 seq3464 98.7 2e-15 seq2394 89.7 1e-12 >seq2399 Length=446898 Score = 125 bits (138), Expect = 2e-23 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || |||||||| | ||| || |||||| | || || | || ||| Sbjct 271457 ATCATCACCGAGGCAGTTGAGATCGAGAAAGAATTCTTGACGGATGCCCTACCTTGCGCC 271398 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || |||| ||||| ||| | |||||| | |||||||| || ||||| || ||| | | Sbjct 271397 CTACTTGGAATGAATTCTAAGCTCATGTGCCAGTACATTGAGTTCGTTGCTGACAGACTA 271338 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || |||||| | ||||| | |||||| ||| ||||| || | ||| ||||| Sbjct 271337 CTTGTGGCCCTTGGTAACAAGAAATTTTACAACGCCACCAACCCATTCGACTTCATGGAC 271278 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||||||| | || || || ||||||||||| |||||||| ||||||| || Sbjct 271277 AACATTTCGTTGGCCGGTAAGACGAACTTCTTCGAGAAGCGTGTTGGTGATTACCAGAAG 271218 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 271217 GCTGGTGTTATG 271206 >seq3464 Length=197824 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 333775 GTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAA 333834 ||||||||||| ||| ||||| || | || ||||| ||||| ||||| || | Sbjct 38205 GTTCGTAATGGTATATATCCGTGCAGACTTCATCCAGGAAGCCGGAATCGTGACTGACGA 38146 Query 333835 TCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACA 333894 ||| || || || || | | | ||| || || |||||| ||||||| | || Sbjct 38145 TCAGGCTCGTAATCTCTGTGTGTTGCTTCAAATAATCCGCGAGCCACTTCACGTTGGTCA 38086 Query 333895 CAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCAC 333954 || || ||||| ||||| ||||||||||| || | | || |||| || |||||||| Sbjct 38085 CATCCAGGTGGTTAGTCGGTTCGTCAAGAAGGAGAACATCAGCCTTCATGATCATTGCAC 38026 Query 333955 GTGCAAGAGCGAGTTTCATTTTCCACCCTCCTGA 333988 ||||||| || | ||||| ||||| || || || Sbjct 38025 GTGCAAGTGCCAACTTCATCTTCCATCCACCAGA 37992 >seq2394 Length=15028 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 306442 TCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCACCCCCTCG 306501 |||||||| || ||| | || || || || | ||| | | || |||||| || Sbjct 4976 TCCTTGCGGGTGCGATTGGCATCGACGATCGCGCGGATCAGGTTCTGCGGCACCTCCGAA 5035 Query 306502 AAATTAGCCAGCAATTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCGTAACCGAACGAT 306561 |||| || || | ||||| |||||||| || | |||||| | ||||| ||||| Sbjct 5036 TAATTGGCGAGGAGCTGCTTGGTATCCTTGGGCAGGCAATAGCCGCCGTAGCCGAAGCTG 5095 Query 306562 GGATTCGAATATCCCTGGCCAATTCGAGGTTCTAGAGTAACACCATCGATGATTTCTTTC 306621 ||||| || || ||| || || || || || || ||||||||||| | | Sbjct 5096 GGATTGTTGTAATGCTTGCCGATGCGCGGATCGAGGCCGACGCCATCGATGATCTGGCGC 5155 Query 306622 GCATTCATATCATGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCATT 306681 | | ||| || | || ||| | | || |||||||||||| | ||||| ||||| Sbjct 5156 GTGTCCATGCCACCGGCGATGGCGTAGCTGTCGAGTTCGTTGAAGAAAGCAACGCGCATC 5215 Query 306682 GCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCGCG 306725 || ||||| || || | ||| || |||| ||||| || ||||| Sbjct 5216 GCGAGATAGGTATTGGCGAACAGCTTGATCGCCTCCGCCTCGCG 5259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102830811207350