Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_011272.1 Length=153894 Score E Sequences producing significant alignments: (Bits) Value seq204 93.3 4e-14 seq654 82.4 8e-11 >seq204 Length=38477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/173 (75%), Gaps = 12/173 (7%) Strand=Plus/Plus Query 112477 CCAAGCCCAAGCCCTGCCTGTGCGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCA 112536 ||||| ||| ||||| | ||||||||||||||| || | || || |||||||| Sbjct 25168 CCAAGAACAACGGCTGCCCGGTCGGCCCGGGCCGTGGATCAGGCGCCGGATCGCTGGTGG 25227 Query 112537 CCTA--CG-TCATGGGCATC-ACCTCGATCGACCCGATCAAGTACGACCTGATGTTCGAG 112592 |||| || ||| | || | ||||||||| ||| || ||||| ||||| |||||||| Sbjct 25228 CCTATTCGCTCAAGATCACCGACCTCGATC--CCC--TCCAGTACAACCTGCTGTTCGAG 25283 Query 112593 CGCTTCATCAACCCGGACCGC--CCCGACTTCCCCGACATCGACGTCGACTTC 112643 |||||| | |||||||| ||| ||| | || ||| ||||| |||||||| Sbjct 25284 CGCTTCCTGAACCCGGAGCGCGTGTCGA--TGCCGGACTTCGACATCGACTTC 25334 >seq654 Length=51332 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 89818 CGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGGTTCGAA 89877 ||||| || | |||| ||| || |||| || ||||||| || ||||||||||||||||| Sbjct 33192 CGGGGAGTGGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCGAA 33133 Query 89878 TCCTGTCACCCCGAC 89892 ||||||| ||||||| Sbjct 33132 TCCTGTCTCCCCGAC 33118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492311377369040