Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_011287.1 Length=58554 Score E Sequences producing significant alignments: (Bits) Value seq1231 401 2e-107 >seq1231 Length=29534 Score = 401 bits (444), Expect = 2e-107 Identities = 657/927 (71%), Gaps = 35/927 (4%) Strand=Plus/Minus Query 42725 AACCGGTGATGCTCGGGCAG-GGCATGAACCTGCAACAGGCACA--CACCTG--CGTCTA 42779 ||||||||||||| |||||| |||| |||||||| | | ||| |||| ||| | Sbjct 4094 AACCGGTGATGCT-GGGCAGCGGCACCAACCTGCAGC-GCCACTGCCACCGCGCCGTGTT 4037 Query 42780 CATCGGCATCACACACAAGTTCAACGACCTCATCCAAAGCCTGCACCGGATCCAGCGGTT 42839 | ||||| | ||||||||||||| ||||||| | |||||| ||||||| || Sbjct 4036 CGTCGGCGTAGGCTTCAAGTTCAACGACTTCATCCAGGCGATCCACCGGCTCCAGCGCTT 3977 Query 42840 CGGCCAAACCCACCCCTGCACAGCCCATCTCATCCACTCCGAAACCGAACGGGAAGTGGT 42899 | || | ||||| | | | | |||||||| ||||||| || ||||| || || Sbjct 3976 CCAGCAGTCGCACCCGGTCGAGGTCGACATCATCCACGCCGAAACTGAGCGGGAGGTCGT 3917 Query 42900 TCGCATCATCCGCGAGAAATGGGCACAACACCGAGAGTTGACATCAACGATGACCGACAT 42959 ||| | | | | ||| ||||| | ||| ||| ||| | ||| |||| || Sbjct 3916 GCGCGACCTGCAGGCGAAGTGGGCGCGTCACGAGGAGCTGAGCGCCCGCATGTCCGAGAT 3857 Query 42960 CATCCACGAATACGGGCTTGACCCCGAGG-CAATCTCGGAAGCGCTGCAACGCTCCATCG 43018 ||||| |||||| || || | | || | | ||||| ||||| | ||||| |||| Sbjct 3856 CATCCGCGAATATGGCCTGCAGCATGACGTCGCCCTCGGC-GCGCTCAAGCGCTCGATCG 3798 Query 43019 GATGCGAACGCATCGAAGCATCCGGCGAGGGATGGCTGTTCGCCAACAACGACTGCGTAC 43078 | ||| || || | | ||||| || ||| | | || ||||||||||||| Sbjct 3797 GCGTCGAGCGGCAGGAGGTCACTGGCGACGGCTGGACGCTGGCGCACAACGACTGCGTCG 3738 Query 43079 CCGAAACCGAGTCGATGGACGACAACTCGGTGGACCTGATCGTCACCAGCATTCCGTTCT 43138 || | | | ||||||| ||||| ||||||||||||||| ||| |||||| Sbjct 3737 ATGAGGCTGCCCGGCTGGACGAAGGATCGGTCGACCTGATCGTCACCTCCATCCCGTTCA 3678 Query 43139 CGAACCACTACGAATACACGCCGAGCTACAACGACTTCGGCCACACCGACGACAACGCCC 43198 ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 3677 GCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACGGACGATGACGGGC 3618 Query 43199 ATTTCTGGGCCCAGATGGACTACCTCACGCCGCAACTGCTGCGGGTCCTCGCTCCTGGCC 43258 |||||| || |||||||| | || |||||| | ||||| || | || || || |||| Sbjct 3617 ATTTCTTCGCGCAGATGGATCATCTGACGCCGAACCTGCTCCGTGCGCTGGCGCCGGGCC 3558 Query 43259 GGATCTATGCCTGC---CACGTCAAGGACCGCATCTTGTTCGGCAACGTCACCGGCGCAG 43315 || || |||||| ||||| |||||||| ||| ||||||| || ||||||| | Sbjct 3557 GGCTC---GCCTGCATCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACCGGCGAGG 3501 Query 43316 GCGTCCCCACCGTCTCCCCGTTCCACGCCGAGGCGATCTTTCAC---GGCCGCAAACACG 43372 | || || |||||| |||||||||||| || ||| ||| ||| |||| Sbjct 3500 GTGTGCCGACCGTCAATCCGTTCCACGCCAAGTGCATCGAGCACTATATGCGC---CACG 3444 Query 43373 GCTTCGACTACCTCGGCATGATCACCGTGGTCACCGATGTGGTGCGGGAAAACAACCAGA 43432 ||||| | | | | |||||||||||||| |||||||| || ||||| || |||||||||| Sbjct 3443 GCTTCCAGTTCATGGGCATGATCACCGTCGTCACCGACGTCGTGCGCGAGAACAACCAGA 3384 Query 43433 CGTACCGGCTGGGCTGGTCCGAGC-AG-TGC--AAAGACGCCACCAAGATGGGCGTTGGC 43488 | ||||| ||| | || | ||| || ||| || |||| ||| ||||||||| ||| Sbjct 3383 CCTACCGCCTG---TCGTAC-AGCGAGATGCTGAAGGACGGCACGAAGATGGGCTGCGGC 3328 Query 43489 TCCCCGGAATACGTTCTGCTGTTCCATAAACCGCAGACAGACAGGTCGAAGGGATACGCC 43548 ||| |||||||| |||||| | | || ||||| | ||| | || || || ||| Sbjct 3327 AGCCCCGAATACGTGCTGCTGATGCGCAAGCCGCAAAGCGACCGCTCACGCGGTTATGCC 3268 Query 43549 GACACCCCCGTCACCAAATCCAAGGACGA---CTACAGCCGTGCCCGTTGGCAGGTGGAC 43605 ||||| || |||||||| || | ||| |||||||| || || |||||||| ||| Sbjct 3267 GACACGCCGGTCACCAA--GGAACG-CGAGAGCTACAGCCTGGCGCGGTGGCAGGTCGAC 3211 Query 43606 GCGCACGCGTTCTGGCGCTCGAGCGGC 43632 || ||||| ||||||||||| |||||| Sbjct 3210 GCCCACGCCTTCTGGCGCTCCAGCGGC 3184 Score = 232 bits (256), Expect = 3e-56 Identities = 239/308 (78%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 41545 TTCACGGCCGTTTCACTCGACGAGGCGAGCGTGCTGCGCTCGTTCGGGTCCAAGACGTAC 41604 ||||| ||||| || |||||||||||| | || |||||||||||||| ||||| | | Sbjct 5773 TTCACCGCCGTCAGCCTGGACGAGGCGAGCATCCTCCGCTCGTTCGGGTCAAAGACCTTC 5714 Query 41605 CAGTCGTTCCTGGAGCTGTTCGACGGGGTGCCCTACCGGTACGTCGCGACGGCCACGCCA 41664 ||| |||||||| ||| ||||| | |||||| ||||| | |||||||| ||||| || Sbjct 5713 CAGACGTTCCTGCCGCTATTCGAGGCGGTGCCGTACCGATTTGTCGCGACCGCCACCCCC 5654 Query 41665 TCGCCGAACCGGTACAAGGAGCTGATCCACTACGCGGGTTATCTCGGGGTGATGGACACC 41724 ||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||||||| Sbjct 5653 TCGCCCAACCGCTACAAGGAGCTGATCCATTACGCCGGTTTCCTCGGCGTGATGGACACC 5594 Query 41725 GGTGCGGCGCTCACGCGTTGGTTCCAGCGGGAC-TCGACCAAGGCGAACAACCTCACCCT 41783 || |||||||| || | |||||||| || ||| |||||| | | |||||||| Sbjct 5593 GGCCAAGCGCTCACCCGCTTCTTCCAGCGCAACAGCGA-GAAGGCGGGCGATCTCACCCT 5535 Query 41784 GTACCCACACAAGACGAAC--GAGTTTTTCCTGTGGCTCAACACCTGGGCTGCATTCGTC 41841 ||||| |||||| |||| ||||| | |||||||| || | |||||| | ||| | Sbjct 5534 CTACCCGCACAAG--GAACAAGAGTTCTGGCTGTGGCTGAATAGCTGGGCCGTTTTCCTG 5477 Query 41842 CAACGACC 41849 || || || Sbjct 5476 CAGCGCCC 5469 Score = 105 bits (116), Expect = 3e-18 Identities = 104/133 (78%), Gaps = 6/133 (5%) Strand=Plus/Minus Query 44886 CTGCCCCTTGCAGTTCGACATCGTTGACCGGCTGATCACTCGCTTCTCGAATCCTGGCGA 44945 ||||||| | |||||||||||||| |||||||||||| || | ||| | | ||||| Sbjct 2884 CTGCCCCCTCCAGTTCGACATCGTCGACCGGCTGATCGAGCGATACTCTATGCGCGGCGA 2825 Query 44946 GTTGGTGTTCGACCCGTTCGGCGGGCTGGGCACCGTGCCGTTGCGGGCACTGAAACTT-- 45003 | |||||||||| |||||| |||| || |||||||||||| |||| || || ||| Sbjct 2824 GCTGGTGTTCGATCCGTTCTGCGGCCTCGGCACCGTGCCGATGCGCGC---GATCCTTGC 2768 Query 45004 -GGTCGGCGCGGC 45015 ||||| |||||| Sbjct 2767 CGGTCGCCGCGGC 2755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187243459620552