Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3158 109 5e-19 seq3224 82.4 8e-11 >seq3158 Length=82937 Score = 109 bits (120), Expect = 5e-19 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTA---TGTTTGACTCCTTTTGAATGTTGTAGTCG 138444 || || ||||| | |||||| ||||| | || || ||||| ||||||||||| ||| Sbjct 52404 CCACCACGCAATCTCAAAACCAAATGCAGAGTGCTT---TCCTTCTGAATGTTGTAATCG 52348 Query 138445 CTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | ||||| || |||||||| || || | | |||| || |||||||| || || Sbjct 52347 GAAAGCGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGT 52288 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTC 138563 || ||||||||||| || ||| | ||||| |||| | || | ||| || | ||| || Sbjct 52287 GGAATACCTTCTTTATC-TTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTC 52229 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | ||| | ||||| || ||||| || || || || |||||||| Sbjct 52228 GACTTCTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | ||| || || | | | || || ||||||||||| |||||| | Sbjct 51242 CCGCCACGGAGGCGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGAC 51183 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || || || | | |||| | || || ||||| ||||| Sbjct 51182 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 51123 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || || || || | || || ||| |||| || | || ||| | ||||||| Sbjct 51122 ATGCCCTCCTTATC-CTGGATCTTGGTCTTAACATTG-TCGATAGTATCGCTAGACTCCA 51065 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||||| || | || || || |||| || || || ||||||||||||| Sbjct 51064 CCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATGG 51014 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | ||||| | || || ||||||||||||||||| Sbjct 51774 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 51715 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| |||| |||| | ||||| ||||| || || Sbjct 51714 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 51655 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| ||||| | |||| | | ||||||| || || | Sbjct 51654 ATTCCCTCCTTGTCT-TGAATTTTCGTTTTTACGTTGT-CAATTGTGTCGGAGGATTCAA 51597 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | ||| | ||| || || || | ||||| || ||||||||||| Sbjct 51596 CTTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| || | || | ||||| | || || ||||||||||||||||| Sbjct 52176 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 52117 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || |||||||| |||| |||| | ||||| ||||| || || Sbjct 52116 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 52057 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| |||| ||||| | |||| | | ||||||| || || | Sbjct 52056 ATTCCCTCCTTGTCT-TGAATTTTCGTTTTTACGTTGT-CAATTGTGTCGGAGGATTCAA 51999 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | ||| | ||| || || || | ||||| || ||||||||||| Sbjct 51998 CTTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 >seq3224 Length=193136 Score = 82.4 bits (90), Expect = 8e-11 Identities = 202/303 (67%), Gaps = 10/303 (3%) Strand=Plus/Minus Query 154248 TAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA 154307 || || |||||||||||||| || | | | | |||||| ||| ||| || || Sbjct 109833 TAAATACCGTCGATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGC 109774 Query 154308 ATGCGCGTTCCCGCC--GAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 |||| ||||| |||||||| ||||| || || || || | ||| ||| || Sbjct 109773 TGTGGCGTCCCCGCATTGAAAAGAG--TGGGAGAAGCATGAGTGAAAAATTTCTGGGACA 109716 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 ||| || || || || | | |||||||| |||||||||||||| | || || | Sbjct 109715 TCAAATTATAGGTCTCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACAC 109656 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGACT---CTATTGTCAATCTTCAAGAGATATC 154482 |||||| |||||| || || || || || ||| | |||| || || |||||| Sbjct 109655 GCATGATCATGTGTTGGGGCCGCTCAGCAACTTTGCCATTG---ATTCGCAGCAGATATG 109599 Query 154483 CATTTTCGAGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGG 154542 | || || || ||| | |||||||| | ||| | ||||| | || | | |||| | Sbjct 109598 ACCTCTCCAGTGTCTTGAACCCGAAATATTGGTAGTTGAAATCACGATCGTAAACGATAG 109539 Query 154543 CCG 154545 ||| Sbjct 109538 CCG 109536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496240806382320