Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3158 111 1e-19 seq3102 84.2 2e-11 >seq3158 Length=82937 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | || | ||||| || || ||||||||||| ||||| || Sbjct 51774 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 51715 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || || ||||| || ||| ||||||| |||||||| || || || Sbjct 51714 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 51655 Query 127007 ATGCCCTCCTTGTCCGTGATTTTC-TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| |||||| | || |||| || | ||||| | || || Sbjct 51654 ATTCCCTCCTTGTCTTGAATTTTCGTTTTTACGTTG-TCAATTGTGTCGGAGGATTCAAC 51596 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||| | ||||| || ||||||||||| Sbjct 51595 TTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || || || | || | ||||| || || ||||||||||| ||||| || Sbjct 52176 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 52117 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || || ||||| || ||| ||||||| |||||||| || || || Sbjct 52116 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 52057 Query 127007 ATGCCCTCCTTGTCCGTGATTTTC-TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| |||||| | || |||| || | ||||| | || || Sbjct 52056 ATTCCCTCCTTGTCTTGAATTTTCGTTTTTACGTTG-TCAATTGTGTCGGAGGATTCAAC 51998 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||| | ||||| || ||||||||||| Sbjct 51997 TTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || ||||||||||| || || ||| || |||||| || || Sbjct 51224 ACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGTGCGGCCGTCCTCG 51165 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| ||||||| || ||||| || ||||| ||||||||||| ||| | Sbjct 51164 AGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCCTCCTTATCCTGG 51105 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| || || || ||| || |||| || | || || Sbjct 51104 ATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCACCTCGAGAGTGATGGTCTTT 51045 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || |||| || || || ||||||||||||| Sbjct 51044 CCTGTCAAGGTCTTGACGAAAATCTGCATGG 51014 >seq3102 Length=369104 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 ||||| || || ||||||| || || ||| || || ||||| ||||| || | ||| Sbjct 110036 TTTTGGATGTTATAATCGCTCAAAGTACGACCGTCTTCGAGCTGCTTTCCGGCAAAAATC 110095 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 ||||||||||| || || || ||||||||||| ||| ||| || || | | ||| Sbjct 110096 AATCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTGCTTTTCACATTGTCG 110155 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104 | ||||| | |||||| || | ||| | || |||||||| || || || || || Sbjct 110156 ATTGTGTCGCTCGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGAA 110214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475480109771440