Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1148 149 2e-31 seq3011 91.5 4e-14 seq1423 86.0 2e-12 >seq1148 Length=21331 Score = 149 bits (164), Expect = 2e-31 Identities = 504/769 (66%), Gaps = 22/769 (3%) Strand=Plus/Minus Query 8374 ATCACCGGAACGCCGACCGGATTTGTCGACTTAGAC-GCGCGACTCGACGGTATGCATGG 8432 |||||||| ||| | ||| || |||| | ||| || ||| | ||| |||| || Sbjct 12501 ATCACCGGCGTGCCCAGCGGCTTCCACGACCTGGACCGCATGAC-CTCCGGCCTGCAGGG 12443 Query 8433 CGGTGAGTTGATTATCGTCGGCGGACGGCCGT-CGATGGGAAAGACCTCCCTCGCAATGA 8491 ||| || | || ||| | ||||| | ||| | ||||||| |||||||| || || || | Sbjct 12442 CGGCGACCTCATCATCCT-GGCGGCCCGCCCTTCGATGGGCAAGACCTCGCTGGCCATCA 12384 Query 8492 ATATCGCAGAGCATGTCGCCATCGTGTCGA--GATTGCCCGTCGGCGTCTTGTCGCTGGA 8549 | ||||| ||||| || ||| || ||| | ||||||||| ||| || || |||| Sbjct 12383 ACATCGCCGAGCACGTGGCCCTCAA--CGAAGGCCTGCCCGTCGCCGTGTTCTCCATGGA 12326 Query 8550 AATGCCGACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATC--CCGTATCAGCCAA 8607 |||| | ||| || | |||| || | | || |||| ||| ||| ||| Sbjct 12325 AATGGGCGCTTCGCAGCTGGCGGTGCGTATCGTCGGTTC--CATCGGCCGGATCGACCAG 12268 Query 8608 AACAGGCTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCGTC 8667 | | || || ||||| |||||| || ||||| |||||||||||||| | | | Sbjct 12267 ACCCACCTTCGCACCGGGCGCCTCACCGACGACGAGTGGCCGCGCCTGACCGAAGCCATT 12208 Query 8668 GAGCTGATGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCGATCACCCCGT-CGAA 8726 ||| | || | || || |||| || ||| | | | | || | ||| Sbjct 12207 GAGAAGCTGCGCAACATTTCCCTGCACATCGACGAGACGCCAGGCCTGACGGTGAGCGAG 12148 Query 8727 ATTCAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCG---GCTCGGGATGATTGT 8783 | | | || | | ||| || || ||| | |||||| | ||| || |||| || Sbjct 12147 TTGCGCG-CCAACTCGCGCCGGCTGGTGCGCCAGTGCGGCGGCAAGCTGGGCCTGATCGT 12089 Query 8784 CGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCG--GATCT--GAAATGCGGGCCA 8839 || |||||||||||||| ||| | ||| | ||| || | || | || |||| Sbjct 12088 GGTGGACTACCTGCAGCTCATGA-GCGTGTCCTCGGGCATGAGCGACGAGAACCGCGCCA 12030 Query 8840 CCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGA 8899 ||| ||| | ||| || || || | || || | || |||||||| | | ||| Sbjct 12029 CCGCGGTGGGCGAGATCTCCCGTGGCCTGAAGGCGCTGGCCAAGGAACTGGGCTGCCCGG 11970 Query 8900 TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA 8959 | ||||||||||||||||| || || | ||| ||| | ||||||| || | | Sbjct 11969 TGATCGCGCTGTCGCAGCTGTCACGCGGCGTGGAGTCGCGCACCGACAAGCGCCCGATGA 11910 Query 8960 TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCT 9019 || ||| |||||||| ||||| || ||||||||||| |||||||| ||| | || |||| Sbjct 11909 TGAGCGACCTGCGCGAATCGGGCGCCATCGAGCAGGACGCCGACGTCATCATGTTCATCT 11850 Query 9020 ACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTG 9079 ||||||| || ||| ||| ||| | || | ||| |||||| | ||||| Sbjct 11849 ACCGCGACGACTACTACAACAAGGACTCCAAGGAGCCCGGCGTGGCCGAGGTGATCATCA 11790 Query 9080 CGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATTCCAGAA 9128 |||||||| || || || | || ||||| ||| || |||| ||| Sbjct 11789 GCAAGCAGCGGAATGGCCCCACCGGGACCGTCAAGCTGGCCTTCCTGAA 11741 >seq3011 Length=6182 Score = 91.5 bits (100), Expect = 4e-14 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 38064 GTCGCGGGCATCTGGCGTGCGTGGCGTGGCGCCGACGGTGTCGAGACGCTCGCGATGGCG 38123 ||||| ||||||||||| ||||||| ||||||| |||| ||| | || Sbjct 5509 GTCGCCGGCATCTGGCGCCCGTGGCGCCATCCCGACGGCCGCGAGGTCCTCAGCTTCGCC 5568 Query 38124 ATGCTGACGGTGAACGCCGACGAGCACCCGGTGATGAAGCACATGCACCGCCTCGGCGAC 38183 ||||| || |||||||| ||||| || ||| ||||||||| | | || || | || ||| Sbjct 5569 ATGCTCACCGTGAACGCGGACGACCATCCGCTGATGAAGCGCTTCCATCGGCCCGAGGAC 5628 Query 38184 GAGAAGCGATCGGTCGTGATCCTGCGTCCGGCCGACTATGACGAGTGGCT 38233 |||||||| ||| |||||||| ||| | ||||| | | | ||||| Sbjct 5629 GAGAAGCGGATGGTGGTGATCCTCGATCCCGAGGACTACGGCAACTGGCT 5678 >seq1423 Length=4330 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 35458 GGTCGAGGTGATCAACGACGTTAACGGCGAACTGATCAACCTGTATCGCGTCGTTCAGCA 35517 ||||||||||||||||||| | ||||| | |||||||| ||||||||| | | Sbjct 2445 GGTCGAGGTGATCAACGACCTGTCGGGCGACGTCGCCAACCTGTTTCGCGTCGTGCGCCG 2504 Query 35518 TCACCTCGAGGAATTCGTGCGGC-AGTTCAAATGGGCGCTCACCAGTCGGCAGGTGTTCG 35576 ||| ||| ||||| || | |||||| ||| |||| || ||||| | | ||||| Sbjct 2505 GCACTATGAGCCGTTCGT-CGACGAGTTCACCTGGCTGCTCGCCGGTCGGGACGAGTTCG 2563 Query 35577 AGTGGCTGAAGCAGACGGCGCCGGAAACGCTCACCGACATCCAGCGTGCGGCGCGGTTCT 35636 || | | ||||| || ||| ||||||||||| ||| |||| || | || ||| Sbjct 2564 AGCGACAGAAGCGCGTGGATCCGTCGACGCTCACCGATATCGAGCGCGCCGTCCGCTTCC 2623 Query 35637 ACTATCTGCAG 35647 ||| |||||| Sbjct 2624 TCTACCTGCAG 2634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127540327663476