Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3259 114 5e-20 seq3158 107 8e-18 >seq3259 Length=396074 Score = 114 bits (126), Expect = 5e-20 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| ||||| ||| ||||| | | ||| || || || ||| || | || || || Sbjct 233078 AGGGAAGCCTGTTATGCAAGTCGAATTTAAGGGCGAGACGAAACAGTTCACCCCAGAGGA 233137 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 ||| || || |||||||| || || |||| |||||| || || || | ||| | | Sbjct 233138 AATCTCGTCCATGGTTCTCACCAAGATGAGAGAAACTGCCGAGGCTTACCTCGGTGGTAC 233197 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || | | || || | ||||| || ||||| ||||||||| | || || ||||| || Sbjct 233198 TGTCAACAACGCTGTCGTCACTGTCCCAGCTTACTTCAATGATTCTCAGCGCCAAGCGAC 233257 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || || || || | |||||| ||| | ||||||||||| || ||||| || ||||| || Sbjct 233258 CAAGGACGCCGGTCTTATTGCCGGTCTTAATGTTCTTCGTATCATTAACGAGCCTACTGC 233317 Query 451432 AGCTGCTCTAGCATATGGACT 451452 || ||| | || || || || Sbjct 233318 TGCCGCTATTGCGTACGGCCT 233338 >seq3158 Length=82937 Score = 107 bits (118), Expect = 8e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||| || ||||| ||||| | || || ||||| || Sbjct 52178 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAAACCATTACGTTAGAAGTCGAATCGTCA 52237 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| |||| ||| ||||||||||| ||||| ||||| || |||||| Sbjct 52238 GATACCATTGATAACGTTAAGACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 52297 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || | || || | || || ||||| |||||||| | || | | ||||| || Sbjct 52298 CAGCGACTCATCTTTGCTGGAAAGCAACTCGAAGATGGCCGTACGCTTTCCGATTACAAC 52357 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTG 391268 ||| | ||||| || || || || || || ||| || Sbjct 52358 ATTCAGAAGGAAAGCACTCTGCATTTGGTTTTGAGATTG 52396 Score = 96.9 bits (106), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | || || || || || || | || |||||||| || Sbjct 51548 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 51607 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | ||| ||||||||||| ||||| |||||||| || || || Sbjct 51608 GACACAATTGACAACGTAAAAACGAAAATTCAAGACAAGGAGGGAATTCCACCAGACCAG 51667 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || || || || ||| | || ||||||||||||||||| Sbjct 51668 CAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGG 51705 Score = 96.9 bits (106), Expect = 1e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | || || || || || || | || |||||||| || Sbjct 51950 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 52009 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | ||| ||||||||||| ||||| |||||||| || || || Sbjct 52010 GACACAATTGACAACGTAAAAACGAAAATTCAAGACAAGGAGGGAATTCCACCAGACCAG 52069 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGG 391207 || || || || ||| | || ||||||||||||||||| Sbjct 52070 CAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGG 52107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975630282341948