Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3259 161 8e-34 seq3095 86.0 5e-11 >seq3259 Length=396074 Score = 161 bits (178), Expect = 8e-34 Identities = 746/1167 (64%), Gaps = 19/1167 (2%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || ||||| | ||| | |||||||| | || |||| |||| Sbjct 234019 GTCATGACACCACCAGCAGTTTCGATACCCAAGGAAAGAGGGGCAACGTCAAGAAGGAGG 233960 Query 517556 ATAT--TTTGAAGTTTTTCATCAGTTT--GACCAACAAGAATAGCTGCTTGAATAGCAGC 517611 || | || | || || | || | | | |||||| | || ||||| | ||| || Sbjct 233959 ATCTCGTTGGTAGACTTGGAGGAGGTATCGCCGGACAAGA-TGGCAGCTTGGACAGCCGC 233901 Query 517612 ACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 |||||| |||||||| || ||||| || | | || || | | || || ||||| || Sbjct 233900 ACCATAGGCAACAGCCTCGTCAGGGTTGATGGATTTGTTGGGCTCCTTTCCGTTGAAGAA 233841 Query 517672 ATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTT 517730 | |||| | | ||| | ||| |||||||| | || || ||||| || ||||||| Sbjct 233840 GTCGGAAACCATCT-TCTGGATCTTGGGAATACGGGTAGAACCACCAACCAAGACAATTT 233782 Query 517731 CATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGAC 517790 | || || || || || | || | ||| | || ||||||||| || | Sbjct 233781 CGTGAACAGAGGACTTGTCAATCTTGGCATCGCGAAGGACACGTTCAACGGGCTCCATGG 233722 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TA 517849 | || || | ||| || ||||||||||| ||| | || || || | || Sbjct 233721 TGGATCGGAAAAGGTCCTGGCAGAGTTCTTCGAAACGAGCACGGGT--GATGGAAGTGTA 233664 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 || ||||| |||||||| | ||| || | ||||| | ||| || | | ||| || || Sbjct 233663 GAAATCAATACCTTCGAAGAGAGAGTCGATCTCAATGGAAGTCTGGGCAGCAGAGGAAAG 233604 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATT 517968 | || || ||||| || || || || | || | || | || | ||||| Sbjct 233603 AGTGCGCTTGGCACGCTCGCAAGCAGTGCGGAGACGACGGAGAGCACGAG--GATTGGAG 233546 Query 517969 CAAA--TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 | | || | || | || | |||||| || | || | | |||||||| || Sbjct 233545 GAGAGATCCTTCTTGTGCTTGCGCTTGAATTCGTTGACGAAGTGGTTAACAAGACGGTTG 233486 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| ||||| | || | || | || | | |||| ||| | || Sbjct 233485 TCAAAGTCCTCACCACCCAAGTGGGTGTCACCAGCAGTGGACTTGACTTCGAAGATACCC 233426 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 ||||||| || ||| || | |||||| ||| || || |||| ||| ||||| || ||| Sbjct 233425 TCTTCAATAGTCAACAGGGAAACATCAAAGGTGCCGCCGCCCAGATCGAAAATTAGGACA 233366 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 || || || || || || || || ||||||| ||| |||||||| || || Sbjct 233365 TTACGCTCGCCCTCCGTCTTCTTGTCCAGGCCGTACGCAATAGCGGCAGCAGTAGGCTCG 233306 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | | |||||||||||| ||||| || || || || || ||||| | Sbjct 233305 TTAATGATACGAAGAACATTAAGACCGGCAATAAGACCGGCGTCCTTGGTCGCTTGGCGC 233246 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || ||||| || || || || || ||||| | || || | | || ||| | Sbjct 233245 TGAGAATCATTGAAGTAAGCTGGGACAGTGACGACAGCGTTGTTGACAGTACCACCGAGG 233186 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 ||||| || |||| | |||| || | | || ||| || || |||| ||||||| Sbjct 233185 TAAGCCTCGGCAGTTTCTCTCATCTTGGTGAGAACCATGGACGAGATTTCCTCTGGGGTG 233126 Query 518387 TATTGCTTGGATTCATTTTGATATGATACTT-CAAAATATGGTTTATTACCAACATTAAT 518445 | || || | || | | || |||| || || | | || | || | ||| Sbjct 233125 AACTGTTTCGTCTCGCCCTTAAATTCGACTTGCATAACAGGCTTCCCTGCC-TTGTCAAT 233067 Query 518446 AACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTG-GTCATTAAAATCTCTAC 518504 || || || || | | |||||| || | || || || || ||| || | | || Sbjct 233066 AATCTTGAACGGGAAATGTTTCATGTCGGCCTGGAC-CTCTGCGTCGGCGAACTTGCGAC 233008 Query 518505 CAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGG 518564 |||| | ||||| || || || | ||| ||| | || || || || |||||| || | Sbjct 233007 CAATGAGACGTTTGGCGTCGAAGACAGTGTTGATGGGGTTCATGGCGACTTGATTCTTTG 232948 Query 518565 CTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGAT 518624 | ||||| || || ||| | || || ||||| || | ||| | || ||||| || || | Sbjct 232947 CGGCATCACCGATTAGACGCTCGGTATCTGTGAAGGCAACGAACGAGGGAGTAGTTCGGT 232888 Query 518625 TACCTTGATCATTCGCAATAATTTCAA 518651 | || || || || || || || |||| Sbjct 232887 TTCCCTGGTCGTTGGCGATGATCTCAA 232861 >seq3095 Length=411055 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518159 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 518218 ||||| | || |||||||| || |||| || |||||||||||||| |||| | | Sbjct 143934 TCTTGCTCCTTCTCAAGACCGTAGGCAAGGGCCGCAGCAGTTGGTTCGTTAACGACACGA 143993 Query 518219 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 518278 | || || ||||| ||||| || ||||| || |||||||| | ||| || ||||| Sbjct 143994 AGGACGTTGAGACCGGCAATCTGACCAGCATCCTTCGTGGCTTGACGTTGAGAGTCGTTG 144053 Query 518279 AAATATGCAGGAACAGT 518295 || || |||||||| || Sbjct 144054 AAGTAAGCAGGAACGGT 144070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780649661313586