Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3135 86.0 8e-12 seq814 86.0 8e-12 >seq3135 Length=2342 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||||||| ||| ||||| ||||||||||||| |||| || |||| | Sbjct 1326 GGAAGCGTGGCCGAGTGGCTTAAGGCACGGGTCTTGAAAACCCGCGAAGGGGCAACCCTT 1267 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 ||||| |||| |||| |||| |||||| Sbjct 1266 CCGTGAGTTCGAATCTCACCGCTTCCG 1240 >seq814 Length=7057 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||| | |||| ||||||||||| |||| ||||||||||||| || |||| || | || Sbjct 5647 GGATGGGTGGCCGAGTGGTTTAAGGCAGCGGTCTTGAAAACCGCCGTGGGTTCACGCTCA 5588 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 |||||||||| ||||||||| | |||| Sbjct 5587 CCGTGGGTTCGAATCCCACCCCATCCG 5561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610370240109240