Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3224 196 5e-45 seq2399 89.7 6e-13 >seq3224 Length=193136 Score = 196 bits (216), Expect = 5e-45 Identities = 455/685 (66%), Gaps = 2/685 (0%) Strand=Plus/Minus Query 48125 CTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGA 48184 |||||| ||||| || || |||| | ||||| || ||||||||||| | ||||| Sbjct 110242 CTCAAACTCATCACCGTAGACATCGGCCAACCCTGGCGCCTCATTAGGACAGAACAATGT 110183 Query 48185 CCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAA 48244 ||| || | | | | || | |||| || | ||| || |||||||||| | || Sbjct 110182 CCATTCACCGTTCTGCTCAACCCGTTTCATGAACAAATCGGGAGTCCAAAGAGCAAGGAA 110123 Query 48245 TAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCAT 48304 | ||| | | ||| | ||| || || || ||| | ||| || ||||| || | Sbjct 110122 AAGATCACGGGCTCTCACTTCCTCCTTTCCGTGGTTCTTACGAAGATCCAGAAACTCGAA 110063 Query 48305 TATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCC 48364 ||||| | ||||| ||||| | ||| || || | ||||||| || ||||| || || Sbjct 110062 AATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTGGCCGCTTATTGCCACC 110003 Query 48365 TTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGA 48424 |||||| | |||| || || |||||| | || | | ||| || || || ||||| || Sbjct 110002 TTGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAGGAACGATCCCATTGGA 109943 Query 48425 TATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACC 48484 ||||| ||||| | ||| || ||| | || | ||| | || || ||| Sbjct 109942 GGAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATACGATGAACATTAAGACC 109883 Query 48485 TATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTC 48544 |||||||| || |||| || || || ||||| ||| |||||||||||||| || || Sbjct 109882 AATACCACCAGCTGTTTTGGAAATCAGGGCACAGGTTTTGAGGGTATCATAAATACCGTC 109823 Query 48545 TATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCC 48604 || ||||| || |||||| | || ||||| || ||| || || || || || Sbjct 109822 GATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGCTGTGGCGTCCC 109763 Query 48605 TGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | ||| || | || ||||| |||||| | || |||||| || | ||| ||||| || Sbjct 109762 CGCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGGACATCAAATTATAGGT 109703 Query 48665 TTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATA 48724 || || || |||||| || || || | | |||||||| | ||| | Sbjct 109702 CTCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACACGCATGATCATGTG 109643 Query 48725 TTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTT 48784 ||| || | ||| ||| |||| ||| ||| || |||||||| | |||| ||| || Sbjct 109642 TTGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATGACCTCTCCAGTGTCTT 109583 Query 48785 AAAACCAAAATAGTTGTA--TGAAA 48807 || || ||||| | ||| ||||| Sbjct 109582 GAACCCGAAATATTGGTAGTTGAAA 109558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 184/274 (67%), Gaps = 3/274 (1%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || ||||| |||| ||| || | |||| | || || | ||| ||||| || ||| Sbjct 111454 TCGACAGTGAACTGAATGGGTGCAGAGGCTGCCATCGTACGAAGATAGTACATGCCCGTC 111395 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || | ||| | ||||||| || ||||| || || | ||| | |||| || Sbjct 111394 TTCAGACCCAGTTTCCATCCGGCAAAGTGCATGCTTGTGATTTTGCCCATAGTAGGCTCC 111335 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | |||||| || || || ||| ||| ||||| ||||| |||| ||||| ||||| Sbjct 111334 TTGAGATGAATGTTGAGCGACTGAGACTGGTCAATGAATGCGCCTCGGTCAGCAGCCATT 111275 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCT 47216 | | ||| |||||| | || ||||||||||| || |||| |||||||||| | Sbjct 111274 TGAACGATAGTCCTTTGGGAAATTTCCCATACTGTCTTGTAAAGAGCTTTAATGTCTGCG 111215 Query 47217 GGGAGATT---AGTATTTTGAATAGATCCTCCGT 47247 |||| || | | ||||||| || || |||| Sbjct 111214 GGGATGTTTGGAATGTTTTGAACTGAACCGCCGT 111181 >seq2399 Length=446898 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18941 GAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCA 19000 ||||||| ||| | | ||| ||||| || || || |||||||| | | |||| Sbjct 271490 GAAGATGAGAAAAGAGGAGACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGAGAGATCA 271549 Query 19001 ATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAG 19060 |||||| || || || | |||||||| || || | || ||||||||||| || |||| Sbjct 271550 GTTCATTCGAGAAGGTAAGGCCAGGCATAAGACCACGCTTCTTTAACCAGAAAATGGAAG 271609 Query 19061 CAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCAT 19120 | || || ||| ||||| ||||| || || || ||||| ||||| || | | | Sbjct 271610 CGAACGAGCCACTGAAGAAAATACCCTCGACGGCCGCAAAGGCAACCAGCCGCTGAGCGA 271669 Query 19121 AACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTT 19169 || | | || | | || |||||| | ||||| ||||||||||| Sbjct 271670 AAGTGGATTCTTGGTCTTGGATCCATCGAATGGCCCAGTCAGCCTTCTT 271718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084341240840