Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3259 141 7e-28 seq468 105 5e-17 seq3158 100 2e-15 seq3095 91.5 1e-12 >seq3259 Length=396074 Score = 141 bits (156), Expect = 7e-28 Identities = 325/486 (67%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 550053 TTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGG 550112 |||| || || ||||| || || || ||| |||||||||| || | ||| | ||||| | Sbjct 232861 TTGAGATCATCGCCAACGACCAGGGAAACCGAACTACTCCCTCGTTCGTTGCCTTCACAG 232920 Query 550113 AAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATA 550172 | || || | | || | |||||||| ||||| |||||| | | || || | ||| | Sbjct 232921 ATACCGAGCGTCTAATCGGTGATGCCGCAAAGAATCAAGTCGCCATGAACCCCATCAACA 232980 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 || | || || || |||||| | ||||| | | || || | || ||||| | Sbjct 232981 CTGTCTTCGACGCCAAACGTCTCATTGGTCGCAAGTTCGCCGACGCAGAGGTCCAGGCCG 233040 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CT 550291 | ||||| |||| || ||| | ||| || | | || || ||| ||| ||| | Sbjct 233041 ACATGAAACATTTCCCGTTCAAGATTATTGACAAGGCAGGGAAGCCTGTTATGCAAGTCG 233100 Query 550292 ACTCATGAAGGATCTGTT-AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | | | |||| | ||||| || | ||||| |||| || || |||||| | | Sbjct 233101 AAT--TTAAGGGCGAGACGAAACAGTTCACCCCAGAGGAAATCTCGTCCATGGTTCTCAC 233158 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | |||| ||| |||| | ||| || | | || || | || Sbjct 233159 CAAGATGAGAGAAACTGCCGAGGCTTACCTCGGTGGTACTGTCAACAACGCTGTCGTCAC 233218 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 ||| ||||| || || ||||| || || || ||||| || || || || || | |||||| Sbjct 233219 TGTCCCAGCTTACTTCAATGATTCTCAGCGCCAAGCGACCAAGGACGCCGGTCTTATTGC 233278 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || ||||||||||||||||| || || || ||||||||||| || |||| || || || Sbjct 233279 CGGTCTTAATGTTCTTCGTATCATTAACGAGCCTACTGCTGCCGCTATTGCGTACGGCCT 233338 Query 550531 TGATAA 550536 || || Sbjct 233339 GGACAA 233344 >seq468 Length=65293 Score = 105 bits (116), Expect = 5e-17 Identities = 247/367 (67%), Gaps = 13/367 (4%) Strand=Plus/Plus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 |||||| ||||||||||| | ||||||||||| || || ||| | ||| ||| Sbjct 23567 GATTGGAATATTTCAAGAAACCGATTTTGGGGAACACCCATCCCACTCTGGGTCAGTGAC 23626 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGTG-- 368701 ||| ||||| ||||| | | ||| ||| |||||||| |||| | |||| Sbjct 23627 GATTACGAAGAGATTGTGCCTGTGGGTAGTATTGAAGAATTGAAAGAGCTGAGTGGTTAT 23686 Query 368702 --TGCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAA 368759 || | | | | | || | || ||||||||||||||||||| |||||| Sbjct 23687 ACTGGAGAGT-TGACGGACCTTCACCGCGATAAAATTGATCACATTACTATTCCAAGTCG 23745 Query 368760 GAAAGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGG 368819 |||||| |||||| | || || ||||||| | |||| || || ||||||||||| || Sbjct 23746 GAAAGGCAAAGGTGTGCTGCGCCGTGTTGAAGAAATTTTTGACTGTTGGTTTGAATCTGG 23805 Query 368820 TTCTATGCCTTA-TGGTCAAATACATTATCCATTTGATAACGCAAAATACTTTGATAATG 368878 |||||||| | ||| || ||||||||| || || || | | | | ||| | ||| Sbjct 23806 CAGCATGCCTTACTCGTCGAA-ACATTATCCTTTCGAGAATGAAGACCAATTTCAGAAT- 23863 Query 368879 ATAAAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTT 368938 || ||| |||||| | | ||| | || ||||||||||||||||| | Sbjct 23864 ----TCGTTCCCTGG-TGATTTCATTGCTGAAGGTCTGGACCAAACACGTGGTTGGTTCT 23918 Query 368939 ATACCCT 368945 | ||||| Sbjct 23919 ACACCCT 23925 >seq3158 Length=82937 Score = 100 bits (110), Expect = 2e-15 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || |||||||| || || |||||| ||| ||||| |||| || || | | Sbjct 51762 CGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCA 51703 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||||||||| ||||| || || | | ||||| || || |||||||| || || Sbjct 51702 TCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTG 51643 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAAC 563438 ||||||||||| |||||| |||||||| || | | || | | ||| | || | Sbjct 51642 TCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAG-GATTCAACTTCTAACGTGAT 51584 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || || | ||||| |||||||| |||||| Sbjct 51583 CGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCATA 51547 Score = 100 bits (110), Expect = 2e-15 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || |||||||| || || |||||| ||| ||||| |||| || || | | Sbjct 52164 CGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCA 52105 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 |||||||||||||| ||||| || || | | ||||| || || |||||||| || || Sbjct 52104 TCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTG 52045 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAAC 563438 ||||||||||| |||||| |||||||| || | | || | | ||| | || | Sbjct 52044 TCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAG-GATTCAACTTCTAACGTGAT 51986 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || || || | ||||| |||||||| |||||| Sbjct 51985 CGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCATA 51949 Score = 98.7 bits (108), Expect = 8e-15 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 563271 ATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTG 563330 ||| || || ||||| || ||| |||||||| | || || | |||||| ||||| Sbjct 52381 ATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAAAGCGTACGGCCATCTTCGAGTTG 52322 Query 563331 TTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTT 563390 ||||| ||||| || |||| || ||||| || ||||| ||||||||||||||||| || Sbjct 52321 CTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATCTT 52262 Query 563391 TTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAG 563449 | || || ||||| ||||| | || | | ||| | |||| ||||| || | Sbjct 52261 TGTCTTAACGTTATCAATGGTATCTG-ACGATTCGACTTCTAACGTAATGGTTTTTCCCG 52203 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || ||||| || |||||| Sbjct 52202 TCAGGGTCTTCACGAAGATCTGCATA 52177 >seq3095 Length=411055 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || || || || ||||| ||||||||||| || || |||||||| | ||| Sbjct 144070 ACCGTTCCTGCTTACTTCAACGACTCTCAACGTCAAGCCACGAAGGATGCTGGTCAGATT 144011 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || || |||||| | | || ||||| |||||||| || ||||| || || Sbjct 144010 GCCGGTCTCAACGTCCTTCGTGTCGTTAACGAACCAACTGCTGCGGCCCTTGCCTACGGT 143951 Query 550529 CTTGATAA 550536 ||||| || Sbjct 143950 CTTGAGAA 143943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029111909020690