Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_019917.1 Length=62952 Score E Sequences producing significant alignments: (Bits) Value seq1349 122 4e-23 seq3135 89.7 2e-13 seq1247 86.0 3e-12 >seq1349 Length=8317 Score = 122 bits (134), Expect = 4e-23 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 9695 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCG 9754 |||||||||||||||||| |||||| |||||||||| ||||| ||||| || | || Sbjct 7589 CATGGCATCCGTCAACAAGGTCATCATCGTCGGCAACCTCGGGAAGGACCCCGAGATGCG 7648 Query 9755 CTATCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCGACGACCGATCGTTACAA 9814 | |||| ||||||| ||| |||| || | |||| || ||||| || | || Sbjct 7649 CACCTTCCCCAGCGGCGGGCGGGTCTGCAACGTCACCATCGCCACCACCGAGCGCTGGAA 7708 Query 9815 GGACAAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGG 9874 |||||| |||||||| | || || |||| |||||||||||||| | |||| | Sbjct 7709 GGACAAGCAGAGCGGCGAGATGAAGGAGCTGACGGAGTGGCACCGCGTGGTCTTCAATGA 7768 Query 9875 CCGCCTCGCCGAGAT 9889 |||||| |||||||| Sbjct 7769 CCGCCTGGCCGAGAT 7783 >seq3135 Length=2342 Score = 89.7 bits (98), Expect = 2e-13 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 7810 TGGAGGCGTGGCAGAGTGGTTTAATGTACTGGATTTGAAATCCAGCGACGGT--AACCCG 7867 |||| ||||||| |||||| |||| | || || |||||| || |||| || ||||| Sbjct 1327 TGGAAGCGTGGCCGAGTGGCTTAAGGCACGGGTCTTGAAAACCCGCGAAGGGGCAACCCT 1268 Query 7868 TCCGTGAGTTCGAATCTCACCGCCTCCGCCA 7898 ||||||||||||||||||||||| ||||||| Sbjct 1267 TCCGTGAGTTCGAATCTCACCGCTTCCGCCA 1237 >seq1247 Length=8953 Score = 86.0 bits (94), Expect = 3e-12 Identities = 205/304 (67%), Gaps = 17/304 (6%) Strand=Plus/Plus Query 9704 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGTGCCGACCCGGAAACCCGCTATCTCCC 9763 ||| ||||| || || ||||||||||||||||| ||| || ||| | |||| ||| Sbjct 8246 CGTTAACAAGGTTATTCTCGTCGGCAATCTCGGGCGCGATCCCGAATCGCGCTCGTTCCA 8305 Query 9764 GAGCGGCGACGCAATCTCC--AACATCCGCCTCGCGACGACCGATCGTTACAAGGA---C 9818 || ||||| |||| | ||| | ||| ||||||| | ||| | | ||||| | Sbjct 8306 GAACGGCG--GCAAGGTGGTGAACCTGCGCATCGCGACCAGCGAAAGCTGGAAGGATCGC 8363 Query 9819 AAAGCCAGCGGCGACTTCAAAGAAGTGACCGAGTGGCACCGCGTCGCCTTCTTCGGCC-- 9876 || | ||||| ||| ||| ||||| ||||| ||||| ||||| | Sbjct 8364 AATTCG---GGCGAGCGCAAGGAAAAAACCGAATGGCATTCGGTCGCGATCTTCAACGAA 8420 Query 9877 GCCTCGCCGAGATCGTCGACGAGCAC---CTGCGCAAGGGCGCATCGGTCTACATCGAGG 9933 | || | ||| ||| | ||||| | || |||||||| | |||||| ||||||| Sbjct 8421 GGCTTGGCGAA--CGTGGCCGAGCGCTTCCTACGCAAGGGGTCGAAGGTCTATATCGAGG 8478 Query 9934 GGCGCATCAAAACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGA 9993 | | | | || || || ||||||||||| |||||||| ||||| |||||||| Sbjct 8479 GCCAGCTGCAGACCCGCAAATGGCAGGATCAGAATGGCCAGGACCGCTATTCGACCGAGG 8538 Query 9994 TCGT 9997 |||| Sbjct 8539 TCGT 8542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 201313058994033