Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq372 156 7e-33 seq3355 127 3e-24 >seq372 Length=11520 Score = 156 bits (172), Expect = 7e-33 Identities = 182/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 122420 GACCGTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAA 122479 ||||| || ||||||||||| || | |||||| || ||||| || || ||| Sbjct 9524 GACCGCACCGGCACGGGCACGCTCAGCGTCTTCGGCCACCAGATGCGGTTCGATCTGGCC 9583 Query 122480 AAAGGTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTT 122539 | || |||||| || |||| ||||| || | ||||| ||||| |||||| ||| | Sbjct 9584 GAGGGCTTCCCGGTGCTCACCACCAAGAAACTGCACCTGCGCTCGATCATCGTCGAGTTG 9643 Query 122540 CTGTGGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 122599 ||||||||||| ||||| |||||| | | | ||| | || ||| ||||| ||| Sbjct 9644 CTGTGGTTCCTGCGCGGCGACACCAACGTGCGCTGGCTGCAGGATCGCAAGGTCAGCATC 9703 Query 122600 TGGGATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCGT 122659 ||||| |||||||| ||||| | ||| |||||||||||||||| || ||||||||||| Sbjct 9704 TGGGACGAATGGGCGGATGAGGCGGGTGATCTCGGCCCGGTGTATGGCAAGCAATGGCGC 9763 Query 122660 GAGTGG 122665 || ||| Sbjct 9764 GACTGG 9769 >seq3355 Length=30814 Score = 127 bits (140), Expect = 3e-24 Identities = 220/320 (69%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 123072 TGTCCTGTCAGCTGTATCAGCGCAGTGCTGACATGTTCCTAGGCGTACCGTTTAACATTG 123131 |||| || |||||||| ||||||||||| ||||| ||||| ||||| ||||| ||||| | Sbjct 8733 TGTCGTGCCAGCTGTACCAGCGCAGTGCCGACATCTTCCTGGGCGTGCCGTTCAACATCG 8674 Query 123132 CCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGACT 123191 || |||||||| || | |||||| | || |||||| | | |||| || || |||| Sbjct 8673 CCAGCTACGCGCTACTCACGCACATGATCGCGCAGCAGTGCGACCTGGCGGTCGGCGACT 8614 Query 123192 TCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTTGC 123251 || | ||||| || || || || | ||| |||||||| ||||||| || ||| Sbjct 8613 TCATCTGGACCGGCGGCGACTGCCACATCTACAGCAACCACCACGAGCAGGTGGAACTGC 8554 Query 123252 AGTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTCTA 123311 || | | ||| | || ||||| | || ||| || || || |||| || | Sbjct 8553 AGCTCTCCCGCCAGCCCCATCCCTACCCCGTGCTGGACATCAAGCGCAAGCCGGCGTCGA 8494 Query 123312 TCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTATTA 123371 |||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 8493 TCTTCGACTACCGGTACGAGGACTTCGAGGTCCTGGACTACCAGCACCATCCGGCGATCA 8434 Query 123372 AGGCACCGGTGGCGATATGA 123391 |||| || |||||| | ||| Sbjct 8433 AGGCGCCCGTGGCGGTCTGA 8414 Score = 105 bits (116), Expect = 1e-17 Identities = 164/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 122424 GTACGGGCACGGGCACCCTGTCGTTATTCGGCGCACAAATGCGCTTTGACCTGCAAAAAG 122483 |||| |||||| ||| | ||| ||||| || ||||| || |||||| | | | Sbjct 9141 GTACCGGCACGCGCAGCGTGT------TCGGCTACCAGATGCGGTTCGACCTGAACGATG 9088 Query 122484 GTTTCCCGCTGGTCACGACCAAAAAGGTTCACCTCCGCTCCATCATCCATGAGCTTCTGT 122543 | ||||||||||| || ||||| ||||| ||||| ||||||||||| ||||| |||| Sbjct 9087 GCTTCCCGCTGGTGACCACCAAGAAGGTCCACCTGAAATCCATCATCCACGAGCTGCTGT 9028 Query 122544 GGTTCCTCATGGGCGATACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGG 122603 ||||||| |||| | | ||| | | | ||| || | ||| | ||||||| Sbjct 9027 GGTTCCTGGAGGGCTCGAGCGACAACAACAAGCTGCGCGAGCGCGGCGTGACCATCTGGG 8968 Query 122604 ATGAATGGGCAGATGAAGATGGTAATCTCGGCCCGGTGTACGGTAAGCAATGGCG 122658 | |||||||| || || || | || || ||||||||||| ||| ||||| Sbjct 8967 ACGAATGGGCGCGCGAGGACGGCGACCTGGGGCCGGTGTACGGCGTGCAGTGGCG 8913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777598163287600