Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3259 156 3e-32 seq3158 102 5e-16 seq3095 89.7 3e-12 >seq3259 Length=396074 Score = 156 bits (172), Expect = 3e-32 Identities = 452/691 (65%), Gaps = 5/691 (1%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | |||||||| || ||||| ||||| ||||||| |||||| | || ||| | Sbjct 233568 CGTCTCCGCACTGCTTGCGAGCGTGCCAAGCGCACTCTTTCCTCTGCTGCCCAGACTTCC 233627 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| | || ||||| || ||||| ||||||| | ||| || || | ||| Sbjct 233628 ATTGAGATCGACTCTCTCTTCGAAGGTATTGATTTCTACACTTCCATCACCCGTGCTCGT 233687 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 || ||||| | || || || || || || || || |||||||||| || || Sbjct 233688 TTCGAAGAACTCTGCCAGGACCTTTTCCGATCCACCATGGAGCCCGTTGAACGTGTCCTT 233747 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | || ||||||| || || || |||||||| | || || ||||| || Sbjct 233748 CGCGATGCCAAGATTGACAAGTCCTCTGTTCACGAAATTGTCTTGGTTGGTGGTTCTACC 233807 Query 475727 AGAATTCCAAAAATAAGAGAA-ATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 | ||||| || || |||| ||| |||| | || || || || || || | Sbjct 233808 CGTATTCCCAAGATCC-AGAAGATGGTTTCCGACTTCTTCAACGGAAAGGAGCCCAACAA 233866 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 | | || ||||| || |||||||| ||||| || ||||||||||| || || || || Sbjct 233867 ATCCATCAACCCTGACGAGGCTGTTGCCTATGGTGCGGCTGTCCAAGCTGCCATCTTGTC 233926 Query 475846 AGGTCAATCAGACGAGAA-ACTA--AATAATATTGTACTTGTTGACGTAACTCCACTTTC 475902 || | | | || ||| || | || | ||| ||||||| | || ||||| Sbjct 233927 CGGCGATACCTCCTCCAAGTCTACCAACGAGATCCTCCTTCTTGACGTTGCCCCTCTTTC 233986 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 || ||| | ||||| | ||| || | |||||| ||| || | | || || |||| Sbjct 233987 CTTGGGTATCGAAACTGCTGGTGGTGTCATGACTCCTCTCATCAAGCGCAACACCACTAT 234046 Query 475963 CCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 |||| ||| || || || || || |||| || || || || | ||| || Sbjct 234047 CCCAACCAAGAAGTCCGAAACCTTCTCGACTTTCTCCGACAACCAGCCCGGTGTGTTGAT 234106 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 ||| ||| |||||||||| | || || || || ||| || || | || | Sbjct 234107 CCAGGTCTATGAAGGTGAACGTGCTCGTACCAAGGACAACAACTTGCTCGGTAAATTCGA 234166 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 ||| || ||||| || || ||| | || ||||| ||||||||||| ||||| || | Sbjct 234167 ACTTACTGGCATTCCCCCCGCGCCCCGTGGCGTTCCCCAAATTGAAGTCACTTTCGACCT 234226 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||| || || ||||| | || ||| | ||| Sbjct 234227 TGACGCCAACGGTATCATGAACGTTTCCGCT 234257 Score = 105 bits (116), Expect = 4e-17 Identities = 319/488 (65%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| || || |||| || || || | ||| | || || || Sbjct 232863 GAGATCATCGCCAACGACCAGGGAAACCGAACTACTCCCTCGTTCGTTGCCTTCACAGAT 232922 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || || ||||| || || |||||| || || || | || ||| Sbjct 232923 ACCGAGCGTCTAATCGGTGATGCCGCAAAGAATCAAGTCGCCATGAACCCCATCAACACT 232982 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || ||| | | |||||||| || || | || | ||||| | || Sbjct 232983 GTCTTCGACGCCAAACGTCTCATTGGTCGCAAGTTCGCCGACGCAGAGGTCCAGGCCGAC 233042 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| |||| || || ||| | || | | || || || ||| ||| || Sbjct 233043 ATGAAACATTTCCCGTTCAAGATTATTGACAAGGCAGGGAAGCCTGTTATGCAAGTCGAA 233102 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | | | || || || ||||| || | || || |||| || || |||||| | ||| Sbjct 233103 TTTAAG--GGCGAGACGAAACAGTTCACCCCAGAGGAAATCTCGTCCATGGTTCTCACCA 233160 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | |||| || ||| | || || || || | | || || | ||| Sbjct 233161 AGATGAGAGAAACTGCCGAGG-CTTACCTCGGTGGTACTGTCAACAACGCTGTCGTCACT 233219 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || ||||| || || ||||||||||| || ||||| || || || || || ||||| Sbjct 233220 GTCCCAGCTTACTTCAATGATTCTCAGCGCCAAGCGACCAAGGACGCCGGTCTTATTGCC 233279 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 |||||||||||| | ||||| ||||| || || || || ||||| |||| || || || Sbjct 233280 GGTCTTAATGTTCTTCGTATCATTAACGAGCCTACTGCTGCCGCTATTGCGTACGGCCTG 233339 Query 474869 GATAAGAA 474876 || ||||| Sbjct 233340 GACAAGAA 233347 >seq3158 Length=82937 Score = 102 bits (112), Expect = 5e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 480569 ATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTG 480628 ||| || || ||||| || || || ||||| | || || | | |||||| ||||| Sbjct 52381 ATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGGAAAGCGTACGGCCATCTTCGAGTTG 52322 Query 480629 CTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 480688 |||||||||||| || || || |||||||| || ||||| ||||| || ||||||||||| Sbjct 52321 CTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAATACCTTCTTTATCTTGAATCTT 52262 Query 480689 TTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGT 480748 | || || ||||| ||||| | | ||| | ||||| ||||| || || Sbjct 52261 TGTCTTAACGTTATCAATGGTATCTGACGATTCGACTTCTAACGTAATGGTTTTTCCCGT 52202 Query 480749 GAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| || || Sbjct 52201 CAGGGTCTTCACGAAGATCTG 52181 >seq3095 Length=411055 Score = 89.7 bits (98), Expect = 3e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || || || || |||||||||||||| || || ||||| || ||| Sbjct 144070 ACCGTTCCTGCTTACTTCAACGACTCTCAACGTCAAGCCACGAAGGATGCTGGTCAGATT 144011 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| || || | ||| | |||| |||||||| || || || ||||| || ||| Sbjct 144010 GCCGGTCTCAACGTCCTTCGTGTCGTTAACGAACCAACTGCTGCGGCCCTTGCCTACGGT 143951 Query 474866 CTTGATAAG 474874 ||||| ||| Sbjct 143950 CTTGAGAAG 143942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268029883020188