Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3158 113 7e-20 >seq3158 Length=82937 Score = 113 bits (124), Expect = 7e-20 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||| |||||||| ||||| |||||||||||| || Sbjct 52178 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAAACCATTACGTTAGAAGTCGAATCGTCA 52237 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || | || || |||||||||||||| || || ||||| ||| Sbjct 52238 GATACCATTGATAACGTTAAGACAAAGATTCAAGATAAAGAAGGTATTCCACCAGATCAA 52297 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| ||||||||| | | || | || ||||| || Sbjct 52298 CAGCGACTCATCTTTGCTGGAAAGCAACTCGAAGATGGCCGTACGCTTTCCGATTACAAC 52357 Query 156003 ATATCCAAAG--AGGCGACGCTTCATTTAGTGTTAAGATT 156040 || || ||| | || || || ||||| || || ||||| Sbjct 52358 AT-TCAGAAGGAAAGC-ACTCTGCATTTGGTTTTGAGATT 52395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731840154419600