Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3158 120 5e-22 >seq3158 Length=82937 Score = 120 bits (132), Expect = 5e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | | || || || ||||| | ||| || || ||| || ||||| | Sbjct 52406 TACCACCACGCAATCTCAAAACCAAATGCAGAGTGCTTTCCTTCTGAATGTTGTAATCGG 52347 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | | || | || || | ||| || |||||||| || | || |||||| || |||| Sbjct 52346 AAAGCGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTG 52287 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || |||||||||||||| || || | || || ||| || |||||||||||||| | Sbjct 52286 GAATACCTTCTTTATCTTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGA 52227 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||||| ||||||||||| || || | || || | ||| |||||||| Sbjct 52226 CTTCTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905096615269800