Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3224 141 3e-28 seq2301 93.3 1e-13 >seq3224 Length=193136 Score = 141 bits (156), Expect = 3e-28 Identities = 374/568 (66%), Gaps = 5/568 (1%) Strand=Plus/Minus Query 155936 CCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT-CCTCATCGCCGTGATTCTTCCGTA 155994 ||||| |||| |||||| || | || | | ||| |||| | ||||| ||||| || | Sbjct 110137 CCAAAGAGCAAGGAAAAGATCACGGGC-TCTCACTTCCTCCTTTCCGTGGTTCTTACGAA 110079 Query 155995 GCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCAT 156054 | || | || || |||||| | || || || ||||| || || || ||| Sbjct 110078 GATCCAGAAACTCGAAAATATCGGAGTGCCAAGGTTCAAGATAGATGGCGAAGGCACCTG 110019 Query 156055 TCCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAG 156111 || ||| |||||| ||||| || || ||||| || || || ||||||| ||||||| Sbjct 110018 GCCGCTTATTGCCACCTTGATCGACGTATCGAGCGGTGTTGTTAAAGACACGAAGCATAG 109959 Query 156112 GAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACAT 156171 ||| || |||||||| | |||||| ||||| ||| | ||||||| | || | | Sbjct 109958 GAACGATCCCATTGGAGGAGCCATTCGTTCCTGCAATGTAGGAACCAGTCGCACGGATAC 109899 Query 156172 TATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAG 156231 ||||| || || ||||||||||| | ||| ||||| | || || || | | Sbjct 109898 GATGAACATTAAGACCAATACCACCAGCTGTTTTGGAAATCAGGGCACAGGTTTTGAGGG 109839 Query 156232 TATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATT 156291 ||| ||||||| || || ||| || | ||| | || | || ||| | | Sbjct 109838 TATCATAAATACCGTCGATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCT 109779 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 | || |||| || || || ||||| || || || | |||||| | ||| | || | | Sbjct 109778 GTGGCTGTGGCGTCCCCGCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGG 109719 Query 156352 ACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGA 156411 |||| ||| || |||||| | | ||||| | || |||||||| | | | | Sbjct 109718 ACATCAAATTATAGGTCTCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAA 109659 Query 156412 CCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATG 156471 | | ||| ||| || || || ||||| ||| |||| |||||||| || |||| Sbjct 109658 CACGCATGATCATGTGTTGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATG 109599 Query 156472 CGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | ||||| || || ||||||||||| Sbjct 109598 ACCTCTCCAGTGTCTTGAACCCGAAATA 109571 >seq2301 Length=238476 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 5/141 (4%) Strand=Plus/Minus Query 301813 AGAATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGC 301871 |||||||| ||||| ||| |||||||| | || ||||| ||| || | ||||||||| Sbjct 81023 AGAATTTCCTTCAA-ACGAGGAACACCTAGAGTGACGTT---CTTCGAAGAAACACCAGC 80968 Query 301872 AAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAAT 301931 ||| ||||| ||||| || || | ||| || | || || ||||| ||| ||||| | Sbjct 80967 AAAATGGAAGGTATTTAGCGTCATTTGCGTGGCAGGTTCTCCAATGGATTGCGCCGCCAG 80908 Query 301932 CATACCAACCATTTCTCCTGG 301952 | |||||||||||| ||||| Sbjct 80907 GACACCAACCATTTCGCCTGG 80887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471751956475097