Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq1231 165 3e-36 seq1247 143 9e-30 >seq1231 Length=29534 Score = 165 bits (182), Expect = 3e-36 Identities = 441/660 (67%), Gaps = 12/660 (2%) Strand=Plus/Minus Query 38758 CCCGTCATGCTCGGCTCGGGCTGCAATTTCCAGCGACATTGCTGGTGGGCAATCTTCCTC 38817 || || ||||| ||| ||| ||| | ||||| || ||| | || | ||| || Sbjct 4092 CCGGTGATGCTGGGCAGCGGCACCAACCTGCAGCGCCACTGCCACCGCGCCGTGTTCGTC 4033 Query 38818 GGCATTGGTCACAAGTTCAATGACTTCATCCAGGCCGTTCACCGCATCCAGCGATTTCTC 38877 ||| | || ||||||||| |||||||||||||| | ||||| ||||||| || | Sbjct 4032 GGCGTAGGCTTCAAGTTCAACGACTTCATCCAGGCGATCCACCGGCTCCAGCGCTTCCAG 3973 Query 38878 CAGACGCACAAAGTTCGCATCGACCTCATCTACACCGAAGCGGAACGACCGGT-GCGCGA 38936 ||| ||||| || ||||| ||||| || ||||| | || || ||| | ||| Sbjct 3972 CAGTCGCACCCGGTCGAGGTCGACATCATCCACGCCGAAACTGAGCGGGAGGTCGTGCG- 3914 Query 38937 CAACCTCGAAGCCAAATGGCGACGCCACGTGGAGCAGATGGCAATCATGACAGATATCAT 38996 | |||| | || || ||| || |||| ||||| || || |||| | || ||||| Sbjct 3913 CGACCTGCAGGCGAAGTGGGCGCGTCACGAGGAGCTGAGCGCCCGCATGTCCGAGATCAT 3854 Query 38997 TCGCAAATATGGCCTGTCGTCTG-CGGCGATGGCTGAAACCCTCACGCGCGCCATGGGTG 39055 ||| ||||||||||| | || || || | | | |||| |||| | || || | Sbjct 3853 CCGCGAATATGGCCTGCAGCATGACGTCGCCCTCGGCG-CGCTCAAGCGCTCGATCGGCG 3795 Query 39056 TTGAGCGGATCGAAGTTTGCGGCCCGGGCTATCGGCTGGTCAACAATGATTGCGT-GATG 39114 | |||||| || || ||| |||| ||||| |||| || ||||| |||| Sbjct 3794 TCGAGCGGCAGGAGGTCACTGGCGACGGCTGGACGCTGGCGCACAACGACTGCGTCGATG 3735 Query 39115 GAG-TGCAAGAAGATGGGCTCCAACAGCGTT-GACCTGATTGTCACATCGATCCCGTTTT 39172 | ||| | | ||| | | | || | |||||||| ||||| || |||||||| Sbjct 3734 AGGCTGCCCG--GCTGGACGA-AGGATCGGTCGACCTGATCGTCACCTCCATCCCGTTCA 3678 Query 39173 CCACCCAATACGAGTATTCGCCGAACTATGCCGACTTCGGTCATACCGAAGACAATGAGC 39232 || ||| |||||||| |||||| ||| ||||||||| || || || || | | || Sbjct 3677 GCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACGGACGATGACGGGC 3618 Query 39233 ATTTCTGGCAGCAGATGGATTTCCTCATCCCCGAAT-TGCTGCGGGTTCTGGCGCCGGGG 39291 |||||| |||||||||| || | | ||||| |||| || | ||||||||||| Sbjct 3617 ATTTCTTCGCGCAGATGGATCATCTGA-CGCCGAACCTGCTCCGTGCGCTGGCGCCGGGC 3559 Query 39292 CGTGTCGCCGCAATCCATGTGAAGGATCGCATCGTTCCCGGGGGTATGACGGGTCTGGGG 39351 || ||||| ||||| |||||||| || ||| | ||| | |||| || ||| Sbjct 3558 CGGCTCGCCTGCATCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACCGGCGAGGGT 3499 Query 39352 TTTCAAACCGTCTACCCGTTCTCCGACGATTGCATCGCCCGTTTCAAGCGGCACGGGTTC 39411 | | |||||| | |||||| || | | ||||||| | | | ||| ||||| ||| Sbjct 3498 GTGCCGACCGTCAATCCGTTCCACGCCAAGTGCATCGAGCACTATATGCGCCACGGCTTC 3439 Score = 86.0 bits (94), Expect = 2e-12 Identities = 217/327 (66%), Gaps = 6/327 (2%) Strand=Plus/Minus Query 38116 GGGACAAAGATATTCCGCGAGTTCATGCGGCTGTTCGATGGCATCCGGTTCAAGTTCCTC 38175 ||| |||||| |||| |||| ||| ||| ||||| | | | || | || || Sbjct 5728 GGGTCAAAGACCTTCCAGACGTTCCTGCCGCTATTCGAGGCGGTGCCGTACCGATTTGTC 5669 Query 38176 GCCACGGCGACACCGTCACCAAACCAATATGTAGAACTGCTGGCCTATTCCGCATTCCTC 38235 || || || || || || || |||| || || ||| | || ||| |||||| Sbjct 5668 GCGACCGCCACCCCCTCGCCCAACCGCTACAAGGAGCTGATCCATTACGCCGGTTTCCTC 5609 Query 38236 GAGGTTATGGATGTCGGCCAGGCAAAAACGCGGTTTTTCAAGCGCAATTCGGAAAAGGCC 38295 | || ||||| |||||| || || || || ||| ||||||| || ||||| Sbjct 5608 GGCGTGATGGACACCGGCCAAGCGCTCACCCGCTTCTTCCAGCGCAACAGCGAGAAGGCG 5549 Query 38296 GACACGCTCACCATCCATCCGCATAAGGAGCATGAGTTCTGGCTGTGGGTCGCAAGCTGG 38355 | | |||||| || | ||||| ||||| || ||||||||||||||| | |||||| Sbjct 5548 GGCGATCTCACCCTCTACCCGCACAAGGAACAAGAGTTCTGGCTGTGGCTGAATAGCTGG 5489 Query 38356 GGACTGTTTGTCCAGAAGCCCTC---CGATCTCGGATGCTCTGATGAAGGTTACGAGCTA 38412 | | |||| ||| | ||| | | ||| ||||||| | ||| || || ||||| || Sbjct 5488 G--CCGTTT-TCCTGCAGCGCCCGAGCGACCTCGGATTCAGTGACGACGGCTACGATCTG 5432 Query 38413 CCGGAAATTGAGGTGCGCTGGCATGAG 38439 || | | ||||||||||| ||| Sbjct 5431 CCCGCGCTCACCGTGCGCTGGCACGAG 5405 >seq1247 Length=8953 Score = 143 bits (158), Expect = 9e-30 Identities = 252/362 (70%), Gaps = 4/362 (1%) Strand=Plus/Minus Query 31444 GCCACCGCCCTGACTGTCGAGCATGGTCAGCGTCGC-ATTGAAGCCGTTCAACACCACTT 31502 ||| |||||| ||| || ||||||||||| | ||| |||||||| | || ||| || | Sbjct 8594 GCCGCCGCCCGGACCATCAAGCATGGTCAG-GACGCTGTTGAAGCCTTGCAGCACGACCT 8536 Query 31503 CGGTTGTGTAGCGATCACCACC-GTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCC 31561 |||| | ||||| || || || || | |||||| |||||||| ||||||| |||| Sbjct 8535 CGGTCGAATAGCGGTCCTGGCCATTCTGA-TCCTGCCATTTGCGGGTCTGCAGCTGGCCC 8477 Query 31562 TCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCG 31621 ||||| || |||||||| ||||| ||| | ||||| || || | | |||||| Sbjct 8476 TCGATATAGACCTTCGACCCCTTGCGTAGGAAGCGCTCGGCCACGTTCGCCAAGCCTTCG 8417 Query 31622 GTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCG 31681 |||||| |||| |||||| ||||| |||||||| ||||| | ||| || Sbjct 8416 TTGAAGATCGCGACCGAATGCCATTCGGTTTTTTCCTTGCGCTCGCCCGAATTGCGATCC 8357 Query 31682 CGCCAGCTTTCGGAAGTCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTT 31741 |||||||||| ||||| | ||| ||| | | | | || ||| || | Sbjct 8356 TTCCAGCTTTCGCTGGTCGCGATGCGCAGGTTCACCACCTTGCCGCCGTTCTGGAACGAG 8297 Query 31742 CGGATTTCCGGATCGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCC 31801 || ||| |||||| ||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 8296 CGCGATTCGGGATCGCGCCCGAGATTGCCGACGAGAATAACCTTGTTAACGCTGCCTGCC 8237 Query 31802 AT 31803 || Sbjct 8236 AT 8235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169797780800208