Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1635 127 2e-23 seq3177 95.1 1e-13 seq2399 87.8 2e-11 >seq1635 Length=11578 Score = 127 bits (140), Expect = 2e-23 Identities = 219/311 (70%), Gaps = 9/311 (3%) Strand=Plus/Minus Query 1726733 CCGTCGGTGCCGTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGC 1726792 |||||||||||||||||||| ||||| | | || ||| | || || | ||||||||| Sbjct 5200 CCGTCGGTGCCGTTCTTGAACCCGATCGGCGCCGACAGGCCGGAGGCGAGTTCGCGGTGC 5141 Query 1726793 ACCTGGCTCTCGGTCGTGCGCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCAAATA- 1726851 |||||||||||||| ||||||||||| | || ||||||| | |||||| | | || Sbjct 5140 ACCTGGCTCTCGGTGGTGCGCGCGCCGATCGCCCCCCACGAGATCAGGTCGCCGATGTAC 5081 Query 1726852 AGGGGCCACCAGAGGACTGAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAG 1726911 | ||| | | | | || |||||| | | | ||| | | | | || | || Sbjct 5080 TGCGGCGAGATCACGTC-CAGGAACTCGCTGCCGGCCGGCAGGCCCA-GCCG--GTTGAT 5025 Query 1726912 ATCGCGCAACAG--GCGGCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCG 1726969 ||| || ||| || |||||| || |||||| ||| | | |||| | | |||| Sbjct 5024 CTCGATCAGCAGCTGCCGCGCGATGC--GCAGGCCCTCGTCGATGCGGAAGCTCTCGTCC 4967 Query 1726970 AGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAG 1727029 |||| |||||| || |||||||||||| || || |||||||||||||| |||| || Sbjct 4966 AGGTACGGGTCGTTGATCAGGCCCTTCCAGCCCACCGTCGTGCGCGGCTTCTCGAAGTAC 4907 Query 1727030 GCGCGCATGAC 1727040 | ||||| || Sbjct 4906 ACCCGCATCAC 4896 >seq3177 Length=37211 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||||||||| |||||| || |||| || | || |||||| |||| |||||| Sbjct 19183 GCTGCAAACTACCTCGATATCAAGGCTTTGCTAGACGTCGGATGCAAGACTGTTGCCAAC 19124 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||| || || ||||| || || |||||| | ||||| || ||||| || ||| Sbjct 19123 ATGATTAAAGGAAAGTCTCCAGAAGAGATCAGAAAGACTTTCAACATTCAGAACG 19069 >seq2399 Length=446898 Score = 87.8 bits (96), Expect = 2e-11 Identities = 216/322 (67%), Gaps = 7/322 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| ||||| ||||| || | | ||| || Sbjct 271216 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTCGTCTTACCGGCCAACGAAATG 271275 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 ||||| | ||| ||||||| | ||||| || | | || || | | | Sbjct 271276 TTGTCCATGAAGTCGAATGGGTTGGTGGCGTTGTAAAATTTCTTGTTACCAAGGGCCACA 271335 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || | ||| || || ||||| ||||||||||||||||| | ||||| || | Sbjct 271336 AGTAGTCTGTCAGCAACGAACTCAATGTACTGGCACATGAGCTTAGAATTCATTCCAAGT 271395 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | || ||| || |||||||||||||| || |||||| |||| Sbjct 271396 AGGGCGCAAGGTAGGGCATCCGTCAAGAATTCTTTCTCGATCTCAACTGCCTCGGTGATG 271455 Query 868931 ATCTGCCTGG--GCACGTCGGCCGAGGGCTTGTTGACGAGCAT-CGTGTAGAGCAGGCAG 868987 || |||||| | || ||| | |||| | |||||| || | |||| || ||| Sbjct 271456 AT-GGCCTGGACGGCCGGCGGGCCTGGGC--GGTGACGAAGATGAGAAAAGAGGAGACAG 271512 Query 868988 GCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||| ||| | ||||| Sbjct 271513 GCAAAGTCGGTGTGGAGACCCT 271534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106853532838477