Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3158 136 4e-27 >seq3158 Length=82937 Score = 136 bits (150), Expect = 4e-27 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||||| || || || ||| | ||||| ||| || || Sbjct 51548 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 51607 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||||| ||| || |||||||| || ||||| || || || || Sbjct 51608 GACACAATTGACAACGTAAAAACGAAA-ATTCAAGACAAGGAGGGAATTCCACCAGACCA 51666 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || || |||||||| ||||| ||||| || || ||| ||| || | | || || || Sbjct 51667 GCAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCG-GACGC-TCTCTGACTAC 51724 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| ||||| |||||||| | || | || ||||| || || Sbjct 51725 AACATTCAAAAAGAATCCACACTACATCTTGTCCTTCGGTTGCGTGGTGG 51774 Score = 136 bits (150), Expect = 4e-27 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| ||||||| || || || ||| | ||||| ||| || || Sbjct 51950 ATGCAGATTTTCGTGAAAACCTTAACCGGCAAGACGATCACGTTAGAAGTTGAATCCTCC 52009 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || |||| ||||| ||| || |||||||| || ||||| || || || || Sbjct 52010 GACACAATTGACAACGTAAAAACGAAA-ATTCAAGACAAGGAGGGAATTCCACCAGACCA 52068 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGATTAT 24880 || || |||||||| ||||| ||||| || || ||| ||| || | | || || || Sbjct 52069 GCAGCGGTTGATCTTCGCCGGCAAACAACTTGAAGATGGTCG-GACGC-TCTCTGACTAC 52126 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| ||||| |||||||| | || | || ||||| || || Sbjct 52127 AACATTCAAAAAGAATCCACACTACATCTTGTCCTTCGGTTGCGTGGTGG 52176 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || ||||| |||||| | ||||| ||| | | Sbjct 52178 ATGCAGATCTTCGTGAAGACCCTGACGGGAAAAACCATTACGTTAGAAGTCGAATCGTCA 52237 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || |||| ||| || |||||| ||||| |||||||| || || || ||||| Sbjct 52238 GATACCATTGATAACGTTAAGAC-AAAGATTCAAGATAAAGAAGGTATTCCACCAGATCA 52296 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || | |||||||| || || || || || ||| | | | || ||||| || Sbjct 52297 ACAGCGACTCATCTTTGCTGGAAAGCAACTCGAAGATGGCCGTACGCTTTCCGATTACAA 52356 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| |||||| || || || ||||| ||| ||||||| || || Sbjct 52357 CATTCAGAAGGAAAGCACTCTGCATTTGGTTTTGAGATTGCGTGGTGG 52404 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || | || || || || || || ||||| || || | Sbjct 51013 ACCATGCAGATTTTCGTCAAGACCTTGACAGGAAAGACCATCACTCTCGAGGTGGAGTCT 51072 Query 24761 ACCGACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGA 24819 | ||| || | || || | ||| || || |||||| || || || || || ||||| || Sbjct 51073 AGCGATACTATCGACAATGTTAAGACCAA-GATCCAGGATAAGGAGGGCATTCCTCCAGA 51131 Query 24820 TCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || ||||| ||||||||||| || || ||||| ||||| | | |||| || || Sbjct 51132 CCAGCAACGCTTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTGTCCGACTA 51191 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||||||| ||||| || || |||||||| Sbjct 51192 TAACATTCAAAAAGAATCCACCCTCCACTTGGT 51224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449878023830680