Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_022966.1 Length=88135 Score E Sequences producing significant alignments: (Bits) Value seq2716 82.4 4e-11 >seq2716 Length=3604 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 44274 CGTACTGCGGTGTGCTGCCTGTCGAGTGTTAACCTGGGTACCTACGATGAGTGGAAGGAC 44333 || || || || |||||||||||| | ||||| | || | || ||||||||||| Sbjct 2070 CGCACCGCCGTCTGCTGCCTGTCGTCGCTGAACCTCGAGACGTGGGACCAGTGGAAGGAC 2011 Query 44334 GACCCGCTGTTTATCGCGGACATGGTTCGATTCCTGGACAACGTGCTGGAGTTCTTCATC 44393 ||| || ||| |||| |||| || | || ||||| |||||||||||| || | || Sbjct 2010 GACAAGCAGTTCATCGAGGACGTGATGCGCTTCCTCGACAACGTGCTGCAGGATTATAT- 1952 Query 44394 CGCCTGGCAC-CTCCGAGCATGCACCGGGCCGTACACTCCGCCTCCAAGGAGCGTGCAAT 44452 || | ||||| ||| ||||| | || || | | ||||| | ||||| | | Sbjct 1951 CGACCGGCACGAGCCGGGCATGGAGCGCGCGGCCTATTCCGCGGCGCGCGAGCGCTCGGT 1892 Query 44453 CGGCTTGGGAACCATGGGCTTCCA 44476 |||| |||| |||||||||||| Sbjct 1891 CGGCCTGGGCGTCATGGGCTTCCA 1868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 281895240175136