Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3158 138 9e-28 >seq3158 Length=82937 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || || || | ||| || |||||||||||||||||||| || || | Sbjct 51774 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 51715 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||||||||| || | ||||| | ||||| || || ||| Sbjct 51714 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 51655 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| |||||| |||| ||| || | ||||| || ||| || Sbjct 51654 ATTCCCTCCTTGTCTTG-AATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAAC 51596 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || ||||| ||||||||||| || || |||||||| Sbjct 51595 TTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 138 bits (152), Expect = 9e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || || || | ||| || |||||||||||||||||||| || || | Sbjct 52176 CCACCACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAG 52117 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||||||||| || | ||||| | ||||| || || ||| Sbjct 52116 AGCGTCCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGA 52057 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT-TCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| |||||| |||| ||| || | ||||| || ||| || Sbjct 52056 ATTCCCTCCTTGTCTTG-AATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAAC 51998 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || ||||| ||||||||||| || || |||||||| Sbjct 51997 TTCTAACGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| || || ||||||||||||||||||||||| || | | ||||| Sbjct 51230 CGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGTGCGGCCG 51171 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||||||| | ||||| | |||||| || || ||||| ||||| || Sbjct 51170 TCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCCCTCCTTA 51111 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || || || || || ||| | || | ||| || | || || || ||||| || Sbjct 51110 TCCTG-GATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCACCTCGAGAGTGAT 51052 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || || || |||||||| Sbjct 51051 GGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCAT 51016 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || |||||||| || ||||||||||||| || ||||| Sbjct 51535 ACGAAGGACAAGGTGAAGAGTTGATTCTTTCTGGATGTTATAATCCGAAAGAGTGCGGCC 51476 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || |||||||| | ||||| | |||||| || || ||||| ||||| || Sbjct 51475 GTCCTCAAGCTGCTTGCCAGCGAAGATCAAACGTTGCTGGTCTGGAGGAATGCCCTCCTT 51416 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | ||| ||| | || | || |||||| || || || || || | Sbjct 51415 ATCCTG-AATCTTGGTTTTCACATTATCGATGGTATCAGAAGACTCAACCTCTAGGGTGA 51357 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAAC 29774 | || || || || | ||| || || Sbjct 51356 TGGTCTTTCCTGTCAGGGTCTTGAC 51332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385202857195821