Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3158 118 1e-21 seq3224 113 4e-20 >seq3158 Length=82937 Score = 118 bits (130), Expect = 1e-21 Identities = 164/226 (73%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTA---TGTTTGACTCTTTTTGAATGTTGTAGTCGCTCAT 131958 |||||| | |||||||||||| | || || || || ||||||||||| ||| | Sbjct 52399 ACGCAATCTCAAAACCAAATGCAGAGTGCTT---TCCTTCTGAATGTTGTAATCGGAAAG 52343 Query 131959 GGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTAT 132018 ||||| ||||||||| || || || | | |||| || |||||||||||||| || || Sbjct 52342 CGTACGGCCATCTTCGAGTTGCTTTCCAGCAAAGATGAGTCGCTGTTGATCTGGTGGAAT 52283 Query 132019 GCCTTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTT 132077 ||||||||||| | | | ||||| | ||| | || | ||||| | || || |||| Sbjct 52282 ACCTTCTTTATC-TTGAATCTTTGTCTTAACGTTATCAATGGTATCTGACGATTCGACTT 52224 Query 132078 CGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | ||| | ||||| || ||||| || || | ||| |||||||| Sbjct 52223 CTAACGTAATGGTTTTTCCCGTCAGGGTCTTCACGAAGATCTGCAT 52178 Score = 100 bits (110), Expect = 3e-16 Identities = 158/224 (71%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||| || | | | || |||||||||||||| |||||| || || Sbjct 51237 ACGGAGGCGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGACAGCGT 51178 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || |||||||| || || | | |||| | || || || |||||||| ||||| Sbjct 51177 GCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGAATGCC 51118 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 || ||||| | | || || | ||| | || | ||||||| | | |||||| |||| Sbjct 51117 CTCCTTATC-CTGGATCTTGGTCTTAACATTGTCGATAGTATCGCTAGACTCCACCTCGA 51059 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || |||| || || | ||||||||||||| Sbjct 51058 GAGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATG 51015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | || | ||||| | || |||||||||||||||||||| | || Sbjct 51769 ACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGT 51710 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || ||||| |||| |||| | ||||| || ||||| || || || Sbjct 51709 CCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCC 51650 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| ||| | | || | || |||| | || ||||| | Sbjct 51649 CTCCTTGTCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAA 51590 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || || | ||||| | |||||||||||| Sbjct 51589 CGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || | || | ||||| | || |||||||||||||||||||| | || Sbjct 52171 ACGCAACCGAAGGACAAGATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGT 52112 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || ||||| |||| |||| | ||||| || ||||| || || || Sbjct 52111 CCGACCATCTTCAAGTTGTTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCC 52052 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || |||||| ||| | | || | || |||| | || ||||| | Sbjct 52051 CTCCTTGTCTTGAATTTTCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAA 51992 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || || | ||||| | |||||||||||| Sbjct 51991 CGTGATCGTCTTGCCGGTTAAGGTTTTCACGAAAATCTGCAT 51950 >seq3224 Length=193136 Score = 113 bits (124), Expect = 4e-20 Identities = 215/317 (68%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 148111 TAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGA 148170 || || ||||||||||| || | || | ||| | ||||| ||| ||| || || Sbjct 109833 TAAATACCGTCGATGCTATCTTCCTTCATATCAATGAGGAAACAGGAAGCCATCTGTGGC 109774 Query 148171 ATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATC 148230 |||| ||||| |||||| |||||| || || || || ||||| || |||| Sbjct 109773 TGTGGCGTCCCCGCATTGAAAAGAGTGGGAGAAGCATGAGTGAAAAATTTCTGGGACATC 109714 Query 148231 ATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGC 148290 | ||| ||||| || | | ||||| || |||||||||||||| | || || ||| Sbjct 109713 AAATTATAGGTCTCCATCGTTTTCTCGATATCCTCGCCGTGAATGCCAACGGCAACACGC 109654 Query 148291 ATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTT 148350 |||| |||||| || || || || ||||||| ||||| || |||||| | Sbjct 109653 ATGATCATGTGTTGGGGCCGCTCAGCAACTTTGCCATTGATTCGCAGCAGATATGACCTC 109594 Query 148351 TCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCA 148410 || || || ||| | || || || | ||| | ||||| | |||||| |||| |||| Sbjct 109593 TCCAGTGTCTTGAACCCGAAATATTGGTAGTTGAAATCACGATCGTAAACGATAGCCGAG 109534 Query 148411 TCTAGTGTCTCAGCATG 148427 | ||| ||||||||| Sbjct 109533 TTGAGTTCCTCAGCATG 109517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476590461455160