Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2399 140 5e-27 seq1635 107 3e-17 seq1341 86.0 9e-11 >seq2399 Length=446898 Score = 140 bits (154), Expect = 5e-27 Identities = 215/303 (71%), Gaps = 13/303 (4%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || |||||||| || ||||| ||||| || || ||| ||||| Sbjct 272136 GATTTGGCAAATGTAC-AAGAAGGCCGAAGCATCCTTCTGGACTGCTGAAGAGATCGACT 272078 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTC 1455887 | | || |||| ||||| || | | ||| || || ||| | ||| Sbjct 272077 TGTCCAAGGATCTCCACG----ACTGGAATCAGCGACTCAACGATGATGAACGCTACTTC 272022 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| |||||| | ||||| || ||||||| |||||| |||||| || ||||| | Sbjct 272021 ATCTCACACGTCTTGGCCTTCTT-CGCCGCCTCCGATGGAATCGTGAATGAAAACCTTGT 271963 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || ||||| | ||| |||| | ||||| || |||| || |||||||||||||| Sbjct 271962 CGAGCGCTTCAGTGGTGAGATCCAGATCCCAGAAGCCCGTTGCTTCTACGGGTTCCAGAT 271903 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 || || |||||||||||||| |||||||| ||||| |||||||| || |||| || Sbjct 271902 TATGATGGAGAACATCCACTCTGAGACCTACTCTCTCCTCATCGACACATATATCAAAGA 271843 Query 1456068 CCC 1456070 || Sbjct 271842 GCC 271840 >seq1635 Length=11578 Score = 107 bits (118), Expect = 3e-17 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 165753 GACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAG 165812 |||||| || ||||||| || |||| |||||||||||||||||||||||||||||||| Sbjct 5091 GACCTGATCTCGTGGGGGGCGATCGGCGCGCGCACCACCGAGAGCCAGGTGCACCGCGAA 5150 Query 165813 ATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCA 165864 | || || | ||| || ||| || || ||||| ||| |||||||||||| Sbjct 5151 CTCGCCTCCGGCCTGTCGGCGCCGATCGGGTTCAAGAACGGCACCGACGGCA 5202 >seq1341 Length=16412 Score = 86.0 bits (94), Expect = 9e-11 Identities = 144/200 (72%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 2144665 GCTCGAC-CTCGCGGGCATGGTCATGGCCAGCGACGCCTACTTTCCCTTTCCCGACGGCC 2144723 ||| ||| ||||| || | || |||||||||| || | ||| || || | |||||||| Sbjct 10848 GCTTGACGCTCGCCGGGAGCGTGGTGGCCAGCGATGCGTTCTTCCCGTTCCGCGACGGCC 10789 Query 2144724 CGAGCAAGGCCATCGCCGGCGGCGTCGTCGC-CATCGTGCAGCCGGGCGGC-TCACGCG- 2144780 | | || | | | ||||| | ||| | ||| ||||||||||||| || ||| Sbjct 10788 TGGACGTGGTGGTGGATGCCGGCGCC-TCGTGCGTCGCGCAGCCGGGCGGCAGCATGCGT 10730 Query 2144781 GCGGCGACAAGCCTCGATCGCCGTCTGCGACGAGGCCGGCGTCGCCATGGTCTTTACCGG 2144840 | ||| ||| |||||||| | ||||||| |||||| || |||||||| ||||| Sbjct 10729 GATGCG-GAAG---TGATCGCCGCCGCCGACGAGCGCGGCGTGGCGATGGTCTTCACCGG 10674 Query 2144841 CATGCGCCATTTCCGTCACT 2144860 | ||||||| ||||| |||| Sbjct 10673 CGTGCGCCACTTCCGCCACT 10654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177475451151922