Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_027348.1 Length=73990 Score E Sequences producing significant alignments: (Bits) Value seq372 125 3e-24 seq3355 118 5e-22 >seq372 Length=11520 Score = 125 bits (138), Expect = 3e-24 Identities = 140/183 (77%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 21953 GCTGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCA 22012 ||||||| ||||| |||||| || ||||| ||||| |||||||| ||||||||||||| Sbjct 9946 GCTGCAA-CTCTACCAGCGCTCGGCCGACATCTTCCTTGGCGTGCCGTTCAACATCGCCA 10004 Query 22013 GCTACGCGCTGCTGACGCACCTCATGGCG--GCCACGGTCGGCATGCAGGCCGAGAAGTT 22070 |||| |||||||| || ||| | ||||| || | | ||| || || | | |||| Sbjct 10005 GCTATGCGCTGCTCACCCACATGCTGGCGCAGCAATG--CGGGCTGGAGCCGGGCGAGTT 10062 Query 22071 CATCTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCACATGGACCAGGC---CAAGCA 22127 ||||||| | ||||| || |||||||| || || |||||| | || ||||| | |||| Sbjct 10063 CATCTGGACCGGCGGCGATTGCCACCTTTATTCCAACCACCTCGATCAGGCGCGCGAGCA 10122 Query 22128 GCT 22130 ||| Sbjct 10123 GCT 10125 >seq3355 Length=30814 Score = 118 bits (130), Expect = 5e-22 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 21955 TGCAAACTCTATCAGCGCAGCGCTGACATGTTCCTGGGCGTGCCCTTCAACATCGCCAGC 22014 ||| | || || |||||||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 8728 TGCCAGCTGTACCAGCGCAGTGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGC 8669 Query 22015 TACGCGCTGCTGACGCACCTCATGGCGGCCACGGT-CGGCATGCAGGCCGAGAAGTTCAT 22073 |||||||| || |||||| | || || || | || || | || || || | ||||| Sbjct 8668 TACGCGCTACTCACGCACATGATCGC-GCAGCAGTGCGACCTGGCGGTCGGCGACTTCAT 8610 Query 22074 CTGGTCTGGCGGTGACTGCCACCTGTACTCGAACCAC 22110 |||| | ||||| ||||||||| | ||| |||||| Sbjct 8609 CTGGACCGGCGGCGACTGCCACATCTACAGCAACCAC 8573 Score = 100 bits (110), Expect = 1e-16 Identities = 278/415 (67%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 21405 CAAGTCTGACCGCACTGGCACAGGCACCAAGTCCGTATTCGGTGCCCAGATGGAATTCGA 21464 |||| | |||||||| || || ||||| ||| ||||| ||||||| ||||| Sbjct 9158 CAAGACCGACCGCACCGGTACCGGCACGCGCAGCGTGTTCGGCTACCAGATGCGGTTCGA 9099 Query 21465 TCTGCGTGAGGGCTTCCCCCTGCT--CCAG-AAGAAGA-CCACCCCCTTCACCACGATCT 21520 ||| || |||||||| ||| | ||| |||||| ||||| | | | ||| Sbjct 9098 CCTGAACGATGGCTTCCCGCTGGTGACCACCAAGAAGGTCCACC----TGAAATCCATCA 9043 Query 21521 TCACCGAGCTCTCGTGGATGATGCAGGGCCTGACCAATGTGAACTGGCTACAGCAAAAG- 21579 || |||||| |||| | || ||||| || | | ||| ||| | || | | Sbjct 9042 TCCACGAGCTGCTGTGGTTCCTGGAGGGCTCGAGCGACAACAACAAGCTGC-GCGAGCGC 8984 Query 21580 GGC-TGCCACATCTGGGACGAATGGGCTGGTCCTGATGGCGGCCTCGGCCCGATCTATGG 21638 ||| || | |||||||||||||||||| | || |||| ||| || ||| | || || Sbjct 8983 GGCGTGAC-CATCTGGGACGAATGGGCGCGCGAGGACGGCGACCTGGGGCCGGTGTACGG 8925 Query 21639 TGCCCAGTGGCGCAGCATCCAAGGCCCCGATGGAAAGAACATCGACCAGCTGGCCAAGGC 21698 | |||||||||||| | ||||| || | ||||||||||| | ||| | || Sbjct 8924 CGTGCAGTGGCGCAGCTGGCCGACACCCGACGGCGGGCACATCGACCAGATCGCCGAAGC 8865 Query 21699 AC--AAGAGCTGCTGCTGAACGACCCGGACAGCCGCCGCATCATCGTGAATGCCTGGAAC 21756 |||| | | | | | |||||| |||||||||||||| | ||||||||| Sbjct 8864 GGTGAAGACCATCAA--GGCCAATCCGGACTCGCGCCGCATCATCGTCAGCGCCTGGAAC 8807 Query 21757 GTGGCCGAGCTCGACCAGATGGCCCTGACACCGTGCCATGCGATGTTCCAGTTCT 21811 ||||| || || ||||||| ||| | || ||||| ||| | |||||||||| Sbjct 8806 GTGGCGGACATCCCGAAGATGGCGCTGGCGCCCTGCCACGCGTTCTTCCAGTTCT 8752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236633160486191