Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1375 190 2e-43 >seq1375 Length=57924 Score = 190 bits (210), Expect = 2e-43 Identities = 375/552 (68%), Gaps = 17/552 (3%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 ||||| || |||||||| | ||| ||| |||| | | | | | | || | |||||| Sbjct 5273 ATCTTCCGCAGAGCATTCGCGTCCCGTATTTTCCCACCTGGTCTTGTGGAAAAGTTGGGA 5214 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 | |||| ||| || |||||||||| || || || || || |||||||| || Sbjct 5213 ATTCAACACGTTAAAGGCATTTTGCTTTACGGCCCCCCTGGAACGGGTAAAACATTGATC 5154 Query 19393 GCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCT 19449 |||||| | || ||||| | | | |||| | || ||| |||| ||||||||| Sbjct 5153 GCGAGACAGATTGGTAAAATGTTGAATGCAAAGGAGCCA---AAAGTTGTTAATGGTCCT 5097 Query 19450 GAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGAC 19509 ||| | | || ||||| || || ||||| ||||| ||| | || | |||||||| Sbjct 5096 GAAGTTCTCAACAAATACGTCGGCCAATCCGAAGAGAATATTAGAAAGCTTTTTGCTGAT 5037 Query 19510 GCTGAAGAAGAACAAAAACGTTTAGGGCGCA-AAAGTTCTTTGCACATTATAATACTAGA 19568 |||||| ||||| | || | |||| | ||||| | || ||||| || | || Sbjct 5036 GCTGAAAAAGAATACAAG-GAGAAGGGAGAGGAAAGTGGACTTCATATTATCATTTTCGA 4978 Query 19569 TGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGG---------TGTAAATGGAGTACA 19619 ||||| || || | || |||||||||||| ||| || | ||| || Sbjct 4977 CGAATTAGATGCTGTTTGCAAGCAAAGAGGTAGTGGAGCTGGCGGTGGTACTGGTGTGGG 4918 Query 19620 TGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATAT 19679 ||||| ||||| |||||||| |||| ||| | || |||||| |||||||||||||||| Sbjct 4917 TGACAGCGTTGTGAATCAACTTTTGTCGAAACTTGATGGTGTTGACCAACTGAATAATAT 4858 Query 19680 TTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGG 19739 ||| | ||||| ||||| || || |||| | || ||| ||| | |||||||| || Sbjct 4857 CTTATTGATTGGAATGACCAACCGAATGGATATGATTGACGATGCCCTTTTACGACCAGG 4798 Query 19740 TCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTT 19799 ||| ||||| || | || |||||| |||| ||||| ||| | ||| | || | Sbjct 4797 TCGCCTGGAAGTACACATGGAAATTTCTCTACCTGATGAGAATGGCAGAGTGCAGATCCT 4738 Query 19800 AAACATACATAC 19811 ||| || || || Sbjct 4737 AAAGATTCACAC 4726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439138053405