Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3158 141 6e-29 seq599 87.8 1e-12 >seq3158 Length=82937 Score = 141 bits (156), Expect = 6e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| || ||||||||||| || || || || || || | ||||||||||| Sbjct 51751 ATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTG 51692 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || || || ||||| ||||| || || | ||||||||||||| ||| || Sbjct 51691 TTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT-TGAATTT 51633 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | ||||| ||| | ||||||||| | || ||||| | || ||||| || |||| Sbjct 51632 TCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGG 51573 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||| ||||||||||| Sbjct 51572 TTAAGGTTTTCACGAAAATCTGCAT 51548 Score = 141 bits (156), Expect = 6e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 ||| || ||| || ||||||||||| || || || || || || | ||||||||||| Sbjct 52153 ATGTAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAGAGCGTCCGACCATCTTCAAGTTG 52094 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 ||| ||||| || || || ||||| ||||| || || | ||||||||||||| ||| || Sbjct 52093 TTTGCCGGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT-TGAATTT 52035 Query 34623 TTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 | ||||| ||| | ||||||||| | || ||||| | || ||||| || |||| Sbjct 52034 TCGTTTTTACGTTGTCAATTGTGTCGGAGGATTCAACTTCTAACGTGATCGTCTTGCCGG 51975 Query 34682 TTAACGTTTTCACAAAAATCTGCAT 34706 |||| |||||||| ||||||||||| Sbjct 51974 TTAAGGTTTTCACGAAAATCTGCAT 51950 Score = 91.5 bits (100), Expect = 9e-14 Identities = 164/238 (69%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||||| ||||| ||| || |||||||||||||| || || Sbjct 51242 CCGCCACGGAGGCGAAGAACCAAGTGGAGGGTGGATTCTTTTTGAATGTTATAGTCGGAC 51183 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || || || || ||||| || || Sbjct 51182 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCTGGAGGA 51123 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT----TCGCT--- 34652 | |||||||| || |||| || || ||||| ||||| | ||||| Sbjct 51122 ATGCCCTCCTTATCCTGGATC-TTGGTCTTAAC------ATTGTCGATAGTATCGCTAGA 51070 Query 34653 CTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||||| || | || || || || || || || || || || |||||||||||| || Sbjct 51069 CTCCACCTCGAGAGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAAATCTGCATGGTG 51012 >seq599 Length=174198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||||||||| || || || || ||||||| || ||| Sbjct 69532 TGAAGGGTGGACTCCTTCTGGATGTTATAATCCGAGAGGGTGCGGCCGTCTTCGAGCTGT 69591 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGAT 34619 || ||||| || || | ||| || ||||| || || | |||||||||||||| || Sbjct 69592 TTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATGCCCTCCTTGTCTGTCAT 69647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314716247695073