Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq1148 105 3e-18 seq1349 95.1 5e-15 >seq1148 Length=21331 Score = 105 bits (116), Expect = 3e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 53678 TCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGC 53737 || |||||||| | |||||||| || ||||||||| ||||| |||||||| || |||||| Sbjct 11840 TCGTCGCGGTAGATGAACATGATGACGTCGGCGTCCTGCTCGATGGCGCCCGATTCGCGC 11899 Query 53738 AGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTC 53775 |||||||| | | ||| |||||||||| ||| ||||| Sbjct 11900 AGGTCGCTCATCATCGGGCGCTTGTCGGTGCGCGACTC 11937 >seq1349 Length=8317 Score = 95.1 bits (104), Expect = 5e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 || ||||| ||||| | || || ||| |||| ||||| || | ||| | | ||| Sbjct 7599 GTCAACAAGGTCATCATCGTCGGCAACCTCGGGAAGGACCCCGAGATGCGCACCTTCCCC 7658 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 | |||| ||| |||| ||||| ||||||||| |||| ||||||||||||||||| Sbjct 7659 AGCGGCGGGCGGGTCTGCAACGTCACCATCGCCACCACCGAGCGCTGGAAGGACAAGCAG 7718 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 | |||| || |||| | | |||| ||||||||||| ||| | |||||||| Sbjct 7719 AGCGGCGAGATGAAGGAGCTGACGGAGTGGCACCGCGTGGTCTTCAATGACCGCCTGGCC 7778 Query 7462 GAGAT 7466 ||||| Sbjct 7779 GAGAT 7783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194811146783082