Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq149 84.2 8e-12 >seq149 Length=5882 Score = 84.2 bits (92), Expect = 8e-12 Identities = 231/342 (68%), Gaps = 14/342 (4%) Strand=Plus/Plus Query 5914 CAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCC 5973 |||||| |||| |||||||||| || || || || | ||||| ||||| ||||||||| Sbjct 2951 CAGCGCATCGTGCTCACCCGGCCGGCAGTGGAAGCGGGCGAGAAACTCGGGTTCCTGCCC 3010 Query 5974 GGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGAC 6033 ||| || | ||||| | | || ||||| ||| | |||||| | |||| Sbjct 3011 GGCGACCTGACCCAGAAGGTCGATCCTTACCTGCGGCCGCTCTATGACGCGCTCTACGAC 3070 Query 6034 CTGGTCGGC-CCGA-CG-ATGACGAAGCGCCTCCTCGAGTCGC---GCCAGCTGGAGGTC 6087 || | ||| ||| || |||| ||| || | ||||| ||| ||| |||||| || Sbjct 3071 CTCATGGGCTTCGAGCGCGTGACCAAG-GCGT--TCGAG-CGCAATGCC--CTGGAGATC 3124 Query 6088 GCCCCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAG 6147 || || ||||| | |||||| || || ||| | ||| || | | | || || |||||| Sbjct 3125 GCGCCTCTGGCATTCATGCGCGGGCGCACGCTGAACAACGCCTTCGTCATCCTCGACGAG 3184 Query 6148 ATGCAGAACGCCAC-CCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGAC 6206 |||||| | || |||| | |||| | || | | |||||| | |||||||| | Sbjct 3185 GCCCAGAACACGACGCCCGAG-CAGATGAAGATGTTCCTCACCCGCATCGGCTTCGGCAG 3243 Query 6207 GAAGGCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCC 6248 ||| ||| ||| || ||| |||| ||||||||| Sbjct 3244 CAAGTGCGTGGTGACAGGCGACGTCAGCCAGATCGACCTGCC 3285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191480084484480