Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq204 203 1e-47 seq2984 125 2e-24 >seq204 Length=38477 Score = 203 bits (224), Expect = 1e-47 Identities = 250/335 (75%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 40090 GCCGAAGGTCCCGATCTG--TG-CGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCG 40146 |||||||||| ||||||| || || ||| | ||||| |||||| || | |||||| Sbjct 25418 GCCGAAGGTCGCGATCTGGCTGACGGCCTCG-CGGCC--GTACTTGTCCTTCACGTACTC 25362 Query 40147 GATGACCTCGCCGCGAC--GCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACG 40204 ||||||| | | || ||| | || |||||||||||| | ||| ||||| |||||| Sbjct 25361 GATGACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACG 25304 Query 40205 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTG 40264 ||||| ||||||||||| |||||||| | || || || || ||||||||||||||| Sbjct 25303 CGCTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTG 25244 Query 40265 ATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCAC 40324 ||| ||| | ||||| |||||||| ||||| | || || || || || |||||| Sbjct 25243 ATCTTGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACCGGG 25184 Query 40325 ACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAG 40384 |||||| | |||||||||| |||||||||| | |||| |||||||| ||||| Sbjct 25183 CAGCCGTTGTTCTTGGCCCAGTTGATGAAGTCGCCCACGATGAGGAAGTAACCGGGGAAT 25124 Query 40385 CCCATCTGGATGATCATGTCGATCTCGTACTGGAG 40419 ||||||| | ||| | |||||||| ||| ||| Sbjct 25123 CCCATCTTCAGGATGGTCCCGATCTCGAACTCGAG 25089 Score = 140 bits (154), Expect = 1e-28 Identities = 222/315 (70%), Gaps = 14/315 (4%) Strand=Plus/Minus Query 39033 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCG 39092 ||||||||| ||||||| |||||| | | ||| |||| |||| ||| |||||| | Sbjct 26439 ACTCGGCCGTGTAGTGCACCTTCAGCCAGCCGGTGTGGTACGCGAGCAGCGAGTACGCGG 26380 Query 39093 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACA------ 39146 | | ||||| |||||||||| |||| || ||||| | | || ||| | | Sbjct 26379 CGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAATTTCTCCATCAGGTCGAAGATCTCGT 26320 Query 39147 CCGCCTGGATG-GCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACG 39205 |||||| |||| ||| | | | |||| ||||| | ||| |||| || | Sbjct 26319 CCGCCTTCTCCTGCGCGATCCCATT--CTTCGC-CGCGCCCGCCC----GGAAAATCTCC 26267 Query 39206 AACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCC 39265 | || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || Sbjct 26266 CGGTGCTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCG 26207 Query 39266 TGGCCCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATG 39325 |||||| ||||||| | ||||||||||| | || | |||||| |||||||||| Sbjct 26206 CCGCCCAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACC 26147 Query 39326 ATGAGCCCGTACGTC 39340 |||| ||||| ||| Sbjct 26146 ATGATTCCGTAGGTC 26132 >seq2984 Length=16327 Score = 125 bits (138), Expect = 2e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 40046 AGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCCCGATC 40105 ||||||||| | | ||||||| | | ||||||||| | | |||||||| |||| Sbjct 10026 AGCACGCGGCCGGTATCCTTCAGCACCGCGCGCGCCTTCAGCTTACCGAAGGTGATGATC 9967 Query 40106 TGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGCGACGC 40165 || ||||||| | | ||| || ||||| ||||| ||||| ||||||||||| ||| Sbjct 9966 TGGGCGACCTGATTGCGCCCATATTTCTCCTGCACGTAGCGGATCACCTCGCCGCGCCGC 9907 Query 40166 CGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGC 40225 || ||| ||||| || | ||||||||| || ||||| || ||||| ||||| || Sbjct 9906 GTTTCGCAGAAATCGATATCGAAGTCGGGCATAGAGACGCGTTCCGGGTTGAGGAAGCGT 9847 Query 40226 TCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 ||||| | || || | || |||||||| ||||||||| Sbjct 9846 TCGAACAGCAGGCCCAATTGCAAGGGATCGAGATCGGTGATC 9805 Score = 89.7 bits (98), Expect = 2e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40299 CCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGG 40358 ||||||| ||||| || || ||| | | | | | ||| ||||| ||||||||||| Sbjct 9596 CCGAGCCACGCCCCGGCCCCACCGGTATGTCCTGCGACTTAGCCCATTGGATGAAGTCGG 9537 Query 40359 CGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGA 40418 |||||| |||||| ||| || ||||||||||||||||| | || | |||| | | || Sbjct 9536 CGACGATCAGGAAATAGCCGGGAAAGCCCATCTGGATGATGACATCCAGCTCGAAATCGA 9477 Query 40419 GCTGCTTGCCGT 40430 || |||||| || Sbjct 9476 GCCGCTTGCGGT 9465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160399769300694