Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq3180 120 2e-22 seq2546 87.8 1e-12 >seq3180 Length=115279 Score = 120 bits (132), Expect = 2e-22 Identities = 131/172 (76%), Gaps = 3/172 (2%) Strand=Plus/Minus Query 96683 TTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGA 96742 |||| ||||| ||||| |||| || || || || |||||||| |||||||||| || Sbjct 1239 TTGGCCTTGATCAGGCCGGTGATCACGTCGACCGAAGGCCGCTGGGTCGCCAGGATCAGG 1180 Query 96743 TGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTC 96802 || || ||||| |||||||||||||| || | ||| | ||| | |||| || ||| Sbjct 1179 TGGATGCCGGCGGCGCGCGCCTTCTGCGCCAGGCGAGCGATGAGCTCTTCGA--TC-TTC 1123 Query 96803 TTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGT 96854 ||| | ||||||| ||||| ||||||||||||| ||| |||||||||| Sbjct 1122 TTGCCCACCACCATCATCAGGTCGGCGAGTTCGTCGATCACCACCACGATGT 1071 Score = 100 bits (110), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 96965 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTACGGGGTGAGTTCCACCATC 97024 ||||| |||||||| || ||||| ||||| || | ||| | | |||| |||| Sbjct 873 TCGGTCACCACCGGTGCCAGCAGGTGCGGGATGCCCTCGTAGACCGACATCTCCAGCATC 814 Query 97025 TTCGGGTCGATCATGATGAGTTTGAC-CCGATCAGGATT-GGCTCGGTAGAGCATGGAAA 97082 |||||||||||||| | || ||| || | | || ||| ||| |||| || | Sbjct 813 TTCGGGTCGATCATCAGCAGGCGGACATCG--CGTGCTTCGGCCTTGTAAAGCAGCGACA 756 Query 97083 CCAGCATCGAGTTGATGAAGCTGGACTTACCTGATCCGGTGGCGCCAGCCACCAGCAGGT 97142 | ||||| ||||||| | ||||| || |||||||||| ||| |||||||||| || Sbjct 755 GGATCATCGCGTTGATGCCGACCGACTTGCCGGATCCGGTGGTGCCGGCCACCAGCACGT 696 Query 97143 GCGGCATTTTGGCCAGGT 97160 ||||||| |||||||||| Sbjct 695 GCGGCATCTTGGCCAGGT 678 >seq2546 Length=2143 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 3/177 (2%) Strand=Plus/Minus Query 96676 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 96735 ||||| ||| | ||||| | ||| |||| || || || ||||| ||||||||||||| Sbjct 803 CGGCAGGTTCGCCTTGATCACGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCAT 744 Query 96736 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 96795 || ||| || || || || ||||||||||| || |||| ||| || | || || Sbjct 743 GATGAGGTGGATGCCCGCCGCGCGCGCCTTTTGCGCGAGGCGCTGGATCAGGAATTCCAC 684 Query 96796 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGAT 96852 ||| |||| || |||||| ||||| || || |||||||| | || ||||| Sbjct 683 TTC---CTTGCCCGCGGTCATCATCAGGTCCGCAAGCTCGTCGACGATCACGACGAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351220298956401