Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amauroascus_20niger_20[genbank_20GCA_5F001430945.1_202015-11-03] 3,481 sequences; 36,718,296 total letters Query= NC_028945.1 Length=206713 Score E Sequences producing significant alignments: (Bits) Value seq3355 84.2 3e-11 >seq3355 Length=30814 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 181367 CACCTGATCGAAGTGATTGTTGTAGATGTGGGTATCACCAAGGTTGCCGATCAGTTCCCC 181426 |||||| ||| ||| ||| ||||||||||| || || | | | ||| | || || Sbjct 8561 CACCTGCTCGTGGTGGTTGCTGTAGATGTGGCAGTCGCCGCCGGTCCAGATGAAGTCGCC 8620 Query 181427 GACTTCAAGACCACATTCCAGCGCGATCAGATGTGTCAGGAGCGCGTAAGAGGCGATGTT 181486 ||| | || | || | | ||||||||| || || || |||||||| ||||||||| Sbjct 8621 GACCGCCAGGTCGCACTGCTGCGCGATCATGTGCGTGAGTAGCGCGTAGCTGGCGATGTT 8680 Query 181487 GAAGGGAAGCCCCAAGAAGACGTC--CACGGACCGCTGATTCCAAAGGCAGGACAGTTTG 181544 ||| || | |||| ||||| ||| ||| | ||||| | | |||| ||||| ||| Sbjct 8681 GAACGGCACGCCCAGGAAGATGTCGGCACTG--CGCTGGTACAGCTGGCACGACAGCTTG 8738 Query 181545 TCAT-TGCGAACATAGAACTGGAATCCGTAGTGGCACGGCGGCAAAGCCAT 181594 | | ||| || ||||||||||| |||||| |||| || ||||| Sbjct 8739 CCGTCCGCG-ACGTAGAACTGGAAGAACGCGTGGCAGGGCGCCAGCGCCAT 8788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 661324822851480